BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg902923
Length=1074
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01600.1 | Symbols: anac044, NAC044 | NAC domain containing ... 1692 0.0
AT5G14490.1 | Symbols: anac085, NAC085 | NAC domain containing ... 571 4e-162
> AT3G01600.1 | Symbols: anac044, NAC044 | NAC domain containing
protein 44 | chr3:229171-231105 FORWARD LENGTH=1307
Length=1307
Score = 1692 bits (916), Expect = 0.0
Identities = 1014/1061 (96%), Gaps = 8/1061 (1%)
Strand=Plus/Plus
Query 10 AGGGCTTGGATTGTCGATGGCCGAGGAATTGCAACCAAAGTTAAAAATGCCTCTCTTTCT 69
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 201 AGGGCTTGGATTGTCGATGGTCGAGGAATTGCAGCCAAAGTTAAAAATGCCTCTCTTTCT 260
Query 70 TCAGCTTTGCAGATCCAAGACTGTGGAGCTCATATCAATTGCCCCAACTGCTCTTACCGC 129
||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||
Sbjct 261 TCAGCTTTGCAGATCCAAGACTGTGGAGCTCATATAAAATGCCCCAACTGCACTTACCGC 320
Query 130 ATTGACAACAGCAATGTACTGATTCCATGGCCTGGCCTTCCTAAAGGTGTCAAGTTTGAG 189
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 ATTGACAATAGCAATGTACTGATTCCATGGCCTGGCCTTCCTAAAGGTGTCAAGTTTGAG 380
Query 190 CCAGCCGATGAGGACATTATCGAATTTTTGGAAGCTAAATGTGGGATTGGGGGCTCTGAA 249
||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 381 CCAACTGATGAGGACATTATCGAATTTTTGGAAGCTAAATGTGGGATTGGTGGCTCTGAA 440
Query 250 CCCCATGTTCTTATCGAAGAGTTCATTCGTCCTGTCACTGAAGATGTTGGAATCAATTAC 309
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 CCTCATGTGCTTATCGAAGAGTTCATTCGTCCTGTCACTGAAGATGTTGGAATCAATTAC 500
Query 310 ACTCACCCTCAAAACCTTCCTGGTGCAAACAAAGATGGAGTGAGTGTCTTCTTCTTTCAC 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 501 ACTCACCCTCAAAACCTTCCTGGTGCAAACAAAGATGGAGTGAGTGTCTTCTTCTTTCAC 560
Query 370 AAGACAGTGCAGGCATATGGAACAGGACAGAGGAAACGCAGAAAGATCACACCCACACTT 429
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 561 AAGACAGTGCAGGCATATGGAACAGGACAGAGGAAACGCAGAAAGATCACACCGACACTT 620
Query 430 GTGAACGATGAACCAGTTCGTTGGCACAAGACAGGCAGAACCAAACCTGTGCTGCTCAAT 489
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 621 GTGAACGATGAACCAGTTCGTTGGCACAAGACAGGCAGAACCAAACCTGTGATGCTCAGT 680
Query 490 GGAGTCCAAAGGGGTTGCAAGAAGATCATGGTGCTCTACAAGAGCGCTAGAAAGGGATCG 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 681 GGAGTCCAAAGGGGTTGCAAGAAGATCATGGTGCTCTACAAGAGCGCTAGAAAGGGAACG 740
Query 550 AAGCCTGAGAAATCAAACTGGGTTCTGCATCAGTACCATTTAGGAACAGAAGGGAAAGAA 609
||||| |||||||||||||||||||||||||| |||||| ||||||||||||| |||| |
Sbjct 741 AAGCCCGAGAAATCAAACTGGGTTCTGCATCAATACCATCTAGGAACAGAAGG-AAAGGA 799
Query 610 G-TAGGAGACTATGTTGTTTCCAAGATCACATATCAGCAGCCGAAGCTTGGGGAAAATCC 668
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 800 GATAGGAGACTATGTTGTTTCCAAGATCACATATCAGCAGCAGAAGCTTGGGGAAAATCC 859
Query 669 TGATGAAGGTGAGAGT--T-CCGGGGTTAGAGGTGGCCCAAGAACACCAAAGACGAATAC 725
|||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||
Sbjct 860 TGATGAAGGTGAGAGTAGTTCCGGGGTTAGAGGTGGCCCAACAACACCAAAGACGAATAC 919
Query 726 TCCTACGCCACCTAGCCTTGTAGATGGCGTTGCTGGAGATGAAGAAGCTTTTGATGATTC 785
|||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 920 TCCTACACCACCTAGCCTTGTAGATGGTGTCGCTGGAGATGAAGAAGCTTTTGATGATTT 979
Query 786 AAAGATGTTCGATCCATTTTTTGAGGGACTTGACAGCATTCCTGAAGCTGCTTTAGGGAA 845
||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 980 AAAGATGTTTGATCCATTTTTTGAGGAACTGGACAGCATTCCTGAAGCTGCTTTAGGGAA 1039
Query 846 GATGTGGTCCAAAAAAGCTCGAATGGATGAGGAATTTGTTGTAAACCTTAGTGAAGATAA 905
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1040 GATGTGGTCCAAAAAAGCTCGAATGGATGAGGAATTTGTTGTGAACCTAAGTGAAGATAA 1099
Query 906 CTTAACATGCGACGAAAGCATTGAAGCTTCGTCGCTTTGGGAAAATCAGGTTATCCCCAA 965
||||| ||||||||||||||| ||||||||||| |||||||||||||||||| |||||||
Sbjct 1100 CTTAATATGCGACGAAAGCATGGAAGCTTCGTCTCTTTGGGAAAATCAGGTTCTCCCCAA 1159
Query 966 TCCTACTAGCCTGGGAACTGTTGGGGAATTCGATGGTTTTTCGATTTCAGATCTGGAGAA 1025
||||| |||| |||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1160 TCCTA---GCCTTGGAACTGTTGGGGACTTCGATGGTTTTTCGATATCAGATCTGGAGAA 1216
Query 1026 TGCAGATTTAGGGACTCCCCCTGATTTGCTCACTGTAAGAT 1066
||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1217 TGCAGATTTGGGGACTCCCCCTGATTTCCTCACTGTAAGAT 1257
> AT5G14490.1 | Symbols: anac085, NAC085 | NAC domain containing
protein 85 | chr5:4670779-4672072 REVERSE LENGTH=1053
Length=1053
Score = 571 bits (309), Expect = 4e-162
Identities = 688/863 (80%), Gaps = 57/863 (7%)
Strand=Plus/Plus
Query 9 CAGGGCTTGGATTGTCGATGGCCGA-GGAAT-TGCAACCAAAGTTAAA-AATGCCTCTCT 65
|||| ||||||| || ||||||| | || || | ||| || | |||| ||||| |||||
Sbjct 15 CAGGACTTGGATAGTGGATGGCCCATGG-ATCT-CAAGGAATG-TAAAGAATGCGTCTCT 71
Query 66 TTCTTCAGCTTTGCAGATCCAAGACTGTGGAGCTCATATCAATTGCCCCAACTGCTCTTA 125
||||||||| ||||||| ||||||| |||||| ||||||| ||| |||||||||||
Sbjct 72 GTCTTCAGCTCTGCAGATTAAAGACTGCGGAGCTTATATCAACTGCTTTAACTGCTCTTA 131
Query 126 CCGCATTGACAACAGCAATGTACTGATTCCATGGCCTGGCCTTCCTAAAGGTGTCAAGTT 185
|||||| ||||||||||||||||||| ||||||||| ||||||||||||||||| || ||
Sbjct 132 CCGCATCGACAACAGCAATGTACTGACTCCATGGCCAGGCCTTCCTAAAGGTGTGAAATT 191
Query 186 TGAGCCAGCCGATGAGGACA-TTATCGAATTTTTGGAAGCTAAATGTGGGATTGGGGGCT 244
|||||| |||||||||| | | || || |||||||||||| ||||| |||| ||||
Sbjct 192 CGAGCCAACCGATGAGGA-AGTGATTGAGCATTTGGAAGCTAAGTGTGGTATTGATGGCT 250
Query 245 CT-GAACCCCATGTTCTTATCGAAGAGTTCAT-TCGTCCTGTCACTGAAGATGTTGGAAT 302
| |||| ||| |||||||| |||| || || | || | |||||| |||||||||| ||
Sbjct 251 -TAAAACCACATCTTCTTATCCAAGACTTTATAT-GTTCAGTCACTCAAGATGTTGGTAT 308
Query 303 CAATTACACTCACCCTCAAAACCTTCCTGGTGCAAACAAAGATGG-AGTGAGTGTCTTCT 361
||| ||||||||||||||||||||||| |||| | |||||||| | | ||||||||||
Sbjct 309 CAACTACACTCACCCTCAAAACCTTCCAGGTGTGAGTAAAGATGGAACT-AGTGTCTTCT 367
Query 362 TCTTTCACAAGACAGTGCAGGCATATGGAACA-GGACAGAGGAAA-CGCAGAAAGATCAC 419
||||| ||||||| | || |||||| || | || |||| |||| || |||| ||||||
Sbjct 368 TCTTTAACAAGACGGCACATGCATAT-CAAAATGGGCAGA-GAAAGCGGAGAAGGATCAC 425
Query 420 ACCCACACT--TGTGAACGATGA-ACCAGTTCGTTGGCACAAGACAGG-CAGAACCAAAC 475
| ||| ||| | | || ||||| | | ||||| ||||||||||| || || ||||||||
Sbjct 426 A-CCA-ACTAGTCTCAAGGATGATA-CGGTTCGCTGGCACAAGACTGGTCA-AACCAAAC 481
Query 476 CTGTGCTGCTCAATGGAGTCCA-AAGGGGTTGCAAGAAGATCATGGTGCTCTACAAGAGC 534
| ||| ||||||||||| |||| || ||| ||||||||||||||||||||||||||||||
Sbjct 482 CGGTGATGCTCAATGGAATCCAGAA-GGGATGCAAGAAGATCATGGTGCTCTACAAGAGC 540
Query 535 GCTAGAAAGGGAT-CGAAGCCTGAGAAATCAAACTGGGTTCTGCATCAGTACCATTTAGG 593
|| |||||||||| | || || |||||||| ||||||||| |||| ||||||||||| ||
Sbjct 541 GCGAGAAAGGGATTCAAACCC-GAGAAATCTAACTGGGTTTTGCACCAGTACCATTTGGG 599
Query 594 AACAGAAG--GGAAAGAAGTAGGAGACTATGTTGTTTCCAAGATCACATATCAGCAGCCG 651
||| |||| || ||| | || || |||||||| || ||||||||||||||||| ||
Sbjct 600 AACTGAAGAAGGCGAGAT-TGGG-GAATATGTTGTCTCTAAGATCACATATCAGCAACCA 657
Query 652 AAGCTTG-GG-GAAAATCC-T-GATGA-AGGTGAGAGTTCCGGGGTTAGAGGTGGCCCAA 706
|||| || ||||| || | ||||| || ||||||||| |||||| |||||||||| |
Sbjct 658 AAGCAACAGGAGAAAA-CCATCGATGAGAG-TGAGAGTTCTGGGGTTCGAGGTGGCCCTA 715
Query 707 GAACACC-AAAGACGAATACTCCTACGCCACCTAG-CCTTGTAGATGGC-GTTGCTGGAG 763
| ||||| ||| || | |||| ||| | | ||| ||| || ||| | |||| || ||
Sbjct 716 GCACACCGAAA-ACTAGTACTATTACACAAGTTAGACCT-GT-GATTTCTGTTGATG-AG 771
Query 764 -ATGAAGA-AGCTTTTGATGAT--T-CAAAGATG-TTC--GATCCATTTTTTGAGGGACT 815
||||| | ||||||||||||| | | |||||| ||| ||| ||| | ||||||||
Sbjct 772 GATGAA-ATAGCTTTTGATGATGATTCTAAGATGGTTCTTGATTCATATGCCGAGGGACT 830
Query 816 TGACAGCATTCCTGAAGCTGCTT 838
|| | ||||| |||||| |||
Sbjct 831 GGAGAACATTCAAGAAGCTTCTT 853
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52610171160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5