BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg902931
Length=609
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01530.1 | Symbols: ATMYB57, MYB57 | myb domain protein 57 |... 881 0.0
AT5G49620.2 | Symbols: MYB78 | myb domain protein 78 | chr5:201... 110 2e-23
> AT3G01530.1 | Symbols: ATMYB57, MYB57 | myb domain protein 57
| chr3:210119-211804 REVERSE LENGTH=1507
Length=1507
Score = 881 bits (477), Expect = 0.0
Identities = 581/627 (93%), Gaps = 24/627 (4%)
Strand=Plus/Plus
Query 1 ATGGAGACGACGATGAAGAAGAAAGGGCGAGGGAAGGCGACAATAACAACACAGAAAGAA 60
||||||||||||||||||||||||||| ||| ||| ||||||||||| |||||||||||
Sbjct 654 ATGGAGACGACGATGAAGAAGAAAGGGAGAGTGAAAGCGACAATAACGTCACAGAAAGAA 713
Query 61 GAAGAAGGAACAGTGAGGAAAGGGCCTTGGACTATGGAAGAAGACTTCATCCTCTTTAAT 120
||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||
Sbjct 714 GAAGAAGGAACAGTGAGAAAAGGACCTTGGACTATGGAAGAAGATTTCATCCTCTTTAAT 773
Query 121 TACATCCTTAATCATGGTGAAGGTCTTTGGAACTCTGTCGCCAAAGCCTCTGGTTTAAAA 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 774 TACATCCTTAATCATGGTGAAGGTCTTTGGAACTCTGTCGCCAAAGCCTCTGGTCTAAAA 833
Query 181 CGTACCGGAAAAAGTTGTCGGCTCCGGTGGCTGAACTATCTCCGACCAGATGTGAGGCGA 240
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 834 CGTACTGGAAAAAGTTGTCGGCTCCGGTGGCTGAACTATCTCCGACCAGATGTGCGGCGA 893
Query 241 GGGAACATAACCGCTGAAGAACAGCTTTTGATCATTCAGCTTCATGCTAAGCTTGGAAAC 300
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 GGGAACATAACCGAAGAAGAACAGCTTTTGATCATTCAGCTTCATGCTAAGCTTGGAAAC 953
Query 301 AGGTGGTCGAAGATTGCAAAGCATCTTCCGGGAAGAACGGACAACGAGATAAAGAACTTC 360
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 AGGTGGTCGAAGATTGCGAAGCATCTTCCGGGAAGAACGGACAACGAGATAAAGAACTTC 1013
Query 361 TGGAGGACAAAGATTCAGAGACACATGAAAGT--CAT-GTCA--TC-G--GAA-CAT-AT 410
|||||||||||||||||||||||||||||||| ||| | | | | ||| ||| |
Sbjct 1014 TGGAGGACAAAGATTCAGAGACACATGAAAGTGTCATCGGAAAATATGATGAATCATCAA 1073
Query 411 GAT--TTGTTCGGGAAACTCACAGAGCTCGGGGATGACGACGACGGACCAAGGCAGCTCA 468
|| ||||||||||||||||||||||||||||||||||||| | | | ||||||||
Sbjct 1074 CATCATTGTTCGGGAAACTCACAGAGCTCGGGGATGACGACG-C--A--A-GGCAGCTCC 1127
Query 469 GGCAAAGCCATAGACATGGCTGAGAGCTTCTCTCAGGCGAAGACGACG---TTTAATGTG 525
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 1128 GGCAAAGCCATAGACACGGCTGAGAGCTTCTCTCAGGCGAAGACGACGACGTTTAATGTG 1187
Query 526 GTGGAACA---GTCAAACGAGAATTACTGGAACGTTGAAGATCTGTGGCCTGTCCACTTG 582
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1188 GTGGAACAACAGTCAAACGAGAATTACTGGAACGTTGAAGATCTGTGGCCCGTCCACTTG 1247
Query 583 CTTAATGGTGACCACCATGTGATTTAA 609
|||||||||||||||||||||||||||
Sbjct 1248 CTTAATGGTGACCACCATGTGATTTAA 1274
> AT5G49620.2 | Symbols: MYB78 | myb domain protein 78 | chr5:20137396-20139529
REVERSE LENGTH=1206
Length=1206
Score = 110 bits (59), Expect = 2e-23
Identities = 172/224 (77%), Gaps = 17/224 (8%)
Strand=Plus/Plus
Query 56 AAGAAGAAGAAGGAACAGTGAGGAAAGGGCCTTGGACTA-TGGAAGAAGACTTCA-TCCT 113
|||||||| | || || || |||| ||| || ||||| | | || ||||| || | ||
Sbjct 207 AAGAAGAA-ATGG-AC-GTAAGGAGAGGTCCATGGAC-AGTTGAGGAAGA-TTTAGAGCT 261
Query 114 CTTTAATTACA-TCCTTAATCATGGTGAAGGTCTTTGGAACTCTGTCGC-CAAAGCCTCT 171
| | ||||||| | | || |||||||||||||| ||||||||| |||| | | | |
Sbjct 262 CATCAATTACATTGC-TAGTCATGGTGAAGGTCGATGGAACTCTCTCGCTCGTTG-CGCC 319
Query 172 G-GTTTAAAACGTACCGGAAAAAGTTGTC-GGCTCCGGTGGCTGAACTATCTCCGACCAG 229
| | |||| | ||||||||||| || | | || |||||||||||||||||||||||||
Sbjct 320 GAACTCAAAA-GGACCGGAAAAAGCTG-CAGACTTCGGTGGCTGAACTATCTCCGACCAG 377
Query 230 ATGTGAGGCGAGGGAACATAACCGCT-GAAGAACAGCTTTTGAT 272
||||| | || || ||||||||| || |||||||| || |||||
Sbjct 378 ATGTGCGCCGTGGAAACATAACC-CTCGAAGAACAACTCTTGAT 420
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29336741848
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5