BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg902937
Length=1236
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01490.1 | Symbols: | Protein kinase superfamily protein | ... 2050 0.0
> AT3G01490.1 | Symbols: | Protein kinase superfamily protein
| chr3:190872-193537 REVERSE LENGTH=1738
Length=1738
Score = 2050 bits (1110), Expect = 0.0
Identities = 1194/1236 (97%), Gaps = 0/1236 (0%)
Strand=Plus/Plus
Query 1 ATGAAGGAGAAGTCGGAGAGTGGCGGAGGAGTAGGTTACGTGAGAGCAGATCAGATAGAT 60
|||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 280 ATGAAGGAGAAGGCGGAGAGTGGTGGAGGAGTAGGATACGTGAGAGCAGATCAGATAGAT 339
Query 61 TTGAAGAGTCTGGACGAGCAACTGCAGAGACACTTAAGCAAAGCATGGACGATGGAGAAG 120
|| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 340 TTAAAGAGTCTGGACGAGCAATTGCAGAGACACTTAAGTAAAGCATGGACGATGGAGAAG 399
Query 121 AGGAAGAGTTTGAGTGATGGTGAAGACAACGTCAATAACACCCGACATAACCAGAACAAC 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 400 AGGAAGAGTTTGAGTGATGGTGAAGATAACGTCAATAACACCCGACATAACCAGAACAAC 459
Query 181 TTCGGACATCGACAGCTTGTGTTTCAGAGGCCGCTTCTTGGTGGTGGATATAGcaacaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 460 TTCGGACATCGACAGCTTGTGTTTCAGAGGCCGCTTCTTGGTGGTGGATATAGCAACAAC 519
Query 241 aacaacaacaGCAAGAACGACATAATTAGGTCGACCGAGGTTGGGAGGTCGAGAAGAGAG 300
||||||| ||||||||||||||||||||||||||||||||||| || |||||| ||||||
Sbjct 520 AACAACAGCAGCAAGAACGACATAATTAGGTCGACCGAGGTTGAGAAGTCGAGGAGAGAG 579
Query 301 TGGGAAATTGATCCTTCTAAGCTTATAATCAAAAGTGTGATTGCTAGAGGTACTTTTGGT 360
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 580 TGGGAGATTGATCCTTCTAAGCTTATAATCAAAAGTGTGATTGCTAGAGGTACTTTTGGT 639
Query 361 ACGGTGCACCGTGGAATCTACGATGGTCAAGATGTCGCCGTGAAACTACTAGACTGGGGA 420
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 640 ACGGTTCACCGTGGAATCTACGATGGTCAAGATGTCGCCGTAAAACTACTAGACTGGGGA 699
Query 421 GAAGAGGGGCACAGGTCAGACGCAGAGATAGCTTCGCTTAGAGCTGCTTTCACTCAAGAA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 700 GAAGAGGGGCACAGGTCAGACGCAGAGATAGCTTCGCTTAGAGCTGCTTTCACTCAAGAA 759
Query 481 GTTGCTGTTTGGCATAAGCTTGACCATCCCAATGTCACCAAGTTCATAGGAGCGGCGATG 540
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 760 GTTGCTGTGTGGCATAAGCTCGACCATCCCAATGTCACCAAGTTCATAGGAGCGGCGATG 819
Query 541 GGGACATCGGAGATGAGCATACAAACGGAAAACGGGCAGATGGGAATGCCGAGTAACGTT 600
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 820 GGGACATCGGAGATGAGCATACAAACGGAAAACGGGCAAATGGGAATGCCGAGTAACGTT 879
Query 601 TGCTGCGTCGTGGTTGAGTATTGCCCCGGCGGCGCTCTCAAGTCTTTCCTCATCAAAACT 660
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 880 TGCTGTGTCGTGGTTGAGTATTGCCCCGGCGGCGCTCTCAAGTCATTCCTCATCAAAACT 939
Query 661 CGCCGCCGCAAACTCGCTTTCAAAGTTGTTATCCAACTCTCCCTTGATCTTGCTCGCGGG 720
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 940 CGCCGCCGCAAACTCGCCTTCAAAGTCGTTATCCAACTCTCCCTTGATCTTGCTCGCGGG 999
Query 721 TTAAGTTATTTGCACTCTCAGAAGATTGTGCATAGAGACGTGAAAACGGAGAACATGCTT 780
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1000 TTGAGTTACTTGCACTCTCAGAAGATTGTGCATAGAGACGTGAAAACGGAGAACATGCTT 1059
Query 781 TTAGACAAGTCACGCACCTTAAAGATTGCAGATTTTGGTGTGGCTCGTCTCGAGGCTTCA 840
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1060 TTAGATAAGTCACGCACCTTAAAGATTGCAGATTTTGGTGTGGCTCGTCTAGAGGCTTCA 1119
Query 841 AACCCTAACGACATGACCGGTGAGACCGGAACCTTGGGCTACATGGCTCCAGAGGTGCTA 900
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1120 AACCCTAACGACATGACCGGTGAGACCGGAACCTTGGGCTATATGGCTCCTGAGGTGCTA 1179
Query 901 AATGGGAGTCCGTACAACAGAAAATGCGATGTGTATAGCTTTGGGATATGCCTGTGGGAG 960
|| |||||||| ||||||||||| |||||||||||||||||||||||||| || ||||||
Sbjct 1180 AACGGGAGTCCCTACAACAGAAAGTGCGATGTGTATAGCTTTGGGATATGTCTTTGGGAG 1239
Query 961 ATTTACTGTTGCGACATGCCATATCCTGACCTTAGCTTCTCCGAAGTCACCTCCGCCGTC 1020
|||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||
Sbjct 1240 ATTTACTGTTGCGACATGCCTTATCCTGACCTCAGCTTCTCCGAAGTAACCTCCGCCGTC 1299
Query 1021 GTCCGCCAGAATTTGAGACCGGAGATACCTAGATGTTGTCCAAGCTCCCTGGCGAACGTA 1080
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1300 GTCCGCCAGAATTTGAGACCAGAGATACCTAGATGTTGTCCAAGCTCGCTGGCGAACGTG 1359
Query 1081 ATGAAGAGGTGTTGGGATGCGAATCCGGAGAAGCGGCCGGAGATGGAGGAAGTGGTGGCG 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1360 ATGAAGAGGTGTTGGGATGCGAATCCGGAGAAGCGGCCGGAGATGGAGGAAGTTGTGGCT 1419
Query 1141 ATGTTGGAGGCTATTGATACTTCTAAAGGCGGAGGAATGATACCTCCTGACCAACAACAA 1200
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1420 ATGTTGGAGGCTATTGATACTTCCAAAGGCGGAGGAATGATTCCTCCTGACCAACAACAA 1479
Query 1201 GGCTGTTTCTGTTTCCGCCGACACCGAGGCCCATGA 1236
||||||||||||||||||||||||||||||||||||
Sbjct 1480 GGCTGTTTCTGTTTCCGCCGACACCGAGGCCCATGA 1515
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60742659450
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5