BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg902963
Length=912
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01311.1 | Symbols: | Protein of unknown function (DUF569) ... 1243 0.0
> AT3G01311.1 | Symbols: | Protein of unknown function (DUF569)
| chr3:103043-104287 REVERSE LENGTH=879
Length=879
Score = 1243 bits (673), Expect = 0.0
Identities = 815/883 (92%), Gaps = 12/883 (1%)
Strand=Plus/Plus
Query 1 ATGGAGATATTTAGAAAGGCAGCGATTGTACGTCTCCGTAGCCACAACGACAAATACCTA 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGATATTTAGAAAGGCAACGATTGTACGTCTCCGTAGCCACAACGACAAATACCTA 60
Query 61 GGCGCCGATGAAGATCAAGAATCCGTTCACCAAGATCGTCGCGGTACAACTAAAAACACC 120
| |||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 61 AGTGCCGATGAAGATCAAGAATCCGTTCATCAAGATCGTCGCGGCACAACAAAAAACACT 120
Query 121 AGATGGACGGTTGAGATCGTACCTGGATCCAATGTGATCCGTCTCCAAAGTTGTTACGGC 180
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 121 AGATGGACGGTTGAGATCGTACCTGGATCCAATGTGATCCGTCTTCAAAGCTGTTACGGC 180
Query 181 AAATACCTTACCGCCACTAATATTCATTTCCTCCTTGGAGCCACCGGTAAAAAGGTACTT 240
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 181 AAATACCTTACCGCCACTAATATTCATTTCCTCCTTGGAGCCACCGGCGAAAAGGTACTT 240
Query 241 CAAACTCTACCGGGAAAGTTGGATTCATCTGCGGAATGGGAGCCGATATCAGACGATGGT 300
||||||||||| | ||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 241 CAAACTCTACCCGAAAAGTTGGATTCATCTGCGGAGTGGGAGCCGCTATCAGACGATGGT 300
Query 301 ATACACGTACGGTTCAAGAGTCGGTACGGACAATATCTAAGGGCGAACAAGGGAGTACCA 360
|||||||||||||||||||||| |||||||||||||| ||||| ||||| || ||||||
Sbjct 301 GTACACGTACGGTTCAAGAGTCGCTACGGACAATATCTGAGGGCAAACAAAGGTGTACCA 360
Query 361 CCGTGGAGAAACTCTATCACACACGATATTCCTAGTCGTACGGTCACACAAGATTGGATC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 361 CCGTGGAGAAACTCTATCACACACGATATTCCTAGTCGTACGGTCACACAAGATTGGGTC 420
Query 421 ATGTGGAGTGTTGATGTTCTCCAGATTCGAGTTACCAAAGATGATGCAG-GATCTACCCA 479
||||||| |||||| ||||| ||||||||||||| |||||||||||||| | ||||||||
Sbjct 421 ATGTGGACTGTTGACGTTCTTCAGATTCGAGTTATCAAAGATGATGCAGAG-TCTACCCA 479
Query 480 TAGTTCTTCCACTTTTTCACGGATTGAGTCAGATGATTCATTTACTGTGAGTTTGCCACT 539
|||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||
Sbjct 480 CAGTTCTTCCACTTTTTCACGGATTGAGTCAGATGATTCGTTTATTGTGAGTTTACCACT 539
Query 540 GAAATCCGAAGGAAGACTAATAAATTACGAGATCGGAGATGATTGTGGGAACATAAATAA 599
|| ||||||||||| |||||| ||||||||| |||||||||| ||||||||||||||||
Sbjct 540 CAAGTCCGAAGGAAGGCTAATATATTACGAGACCGGAGATGATAGTGGGAACATAAATAA 599
Query 600 GGAAATGGGAGAAAAATCATTGATATTCCATGGAAGCGAGTTGATAGAACTAAAGAAGA- 658
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GGAAATAGGAGAAAAATCATTGATATTCCATGGAAGCGAGTTGATAGAACTAAAGAAGAA 659
Query 659 GACTTGAGGAAGAAACAGAGATGGAAGAAGTTATGATCTGCTGTAGAAATCCTCTGAATG 718
| |||||||||||||||||||||||||| |||||||| || |||||||||||| |||| |
Sbjct 660 G-CTTGAGGAAGAAACAGAGATGGAAGATGTTATGATTTGGTGTAGAAATCCTTTGAACG 718
Query 719 AAAAGCTTTGTCCTCTTCAATTGCATCTTCCTCCAAACAACGCAACTATGCATATCATCG 778
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 719 AAAAGCTTTGTCCTCTTCAATTGCATCTTCCTCCTAACAACGCAACTATGCACATCATCG 778
Query 779 TCTTCCCTTCTTCTTTCGGTACTAAACTCACCTCCTTCAAAATATTGTTAGCAGTTATCG 838
|||| |||||||||| |||||||||||| ||||||||| || | |||| || |||||
Sbjct 779 TCTTTCCTTCTTCTTGCGGTACTAAACTTACCTCCTTCTTCAT-T-GTTACCA-TTATC- 834
Query 839 T-TAATTATAATTGTATGTTTATAGCATTTCTAATTTCTTTCA 880
| |||| | ||| | ||||||| ||||| ||||||| |||||
Sbjct 835 TATAATCAAAATA-T-TGTTTAT-GCATTCCTAATTTTTTTCA 874
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44557688389
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5