BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg903003
Length=1413
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02125.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1467 0.0
AT3G02120.1 | Symbols: | hydroxyproline-rich glycoprotein fami... 483 3e-135
> AT3G02125.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: pollen tube; BEST
Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G39200.1);
Has 2247 Blast hits to 1434 proteins in 202
species: Archae - 4; Bacteria - 111; Metazoa - 942; Fungi -
239; Plants - 140; Viruses - 37; Other Eukaryotes - 774 (source:
NCBI BLink). | chr3:378205-379612 FORWARD LENGTH=1298
Length=1298
Score = 1467 bits (794), Expect = 0.0
Identities = 985/1073 (92%), Gaps = 30/1073 (3%)
Strand=Plus/Plus
Query 356 AAACTGAAAATAAAGAACATCAATGGAAGCATTCGA-TGTCTTCAAGGTCATCTTCACGA 414
|||||||||| |||||||||||||||||| |||| | | |||||||||||||||||||||
Sbjct 11 AAACTGAAAACAAAGAACATCAATGGAAGGATTC-AGTTTCTTCAAGGTCATCTTCACGA 69
Query 415 TCTTCATCGATAACATCTGCTTCTTCGGATGGCCACTTTGATATCCGACACTTTCCTCTT 474
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 70 TCGTCATCGATAACATCTGCTTCTTCGGATGGACACTTTGATATCCGACACTTTCCTCTT 129
Query 475 CCTAAGCCATCATTGTCTGCTTCTGAGGCACAGAAACTGAGAGAGTCACATCAGGCTTAT 534
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 CCCAAGCCATCATTGTCTGCTTCTGAGGCACAGAAACTGAGAGAGTCACATCAGGCTTAT 189
Query 535 AATTCATCTGTTAGCTCTTATACCAGTTCGTCTTGGTCCTCAAATCACCAGAACCACCTT 594
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||
Sbjct 190 AATTCATCTGTTAGCTCATATACCAGTTCCTCTTGGTCCTCAAATCACCAGAACCATCTT 249
Query 595 GTTGATTTACCCGGTTACGATCCATCCCGAATTCCATCTTCAGTTTTCTCTAGTAAACCG 654
||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||
Sbjct 250 ATTGATTTACCCGGTTACGATCCAACCAGAATTCCATCCTCAGTTTTCTCTAGTAAACCG 309
Query 655 GGTAATTCGACTGAATGGAGTCTAGCTTCTAATGAATCTTTGTTTAGCATCCACGATGGG 714
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 GGTAATTCGACGGAATGGAGTCTAGCTTCTAATGAATCTTTGTTTAGCATCCACGATGGG 369
Query 715 AATTTTAGCATTTCAACAGCATTAAGATTGGCTGAGATACCAAAATTTGAAGAAACTGTT 774
|||||||||||||||||||| || ||||||||||||||||| | |||||||||||| |||
Sbjct 370 AATTTTAGCATTTCAACAGCGTTGAGATTGGCTGAGATACCGAGATTTGAAGAAACGGTT 429
Query 775 CACGAGATAACCGAAATCAACACGGTTCCTCTTCCTCCTCCTTTACCTCCGGGTAAAAAA 834
|||| |||||||||||||||| ||||| | | | || ||| |||||||| ||| |||
Sbjct 430 CACGTGATAACCGAAATCAACTCGGTT-C-C-T-CT--TCC---ACCTCCGGTTAAGAAA 480
Query 835 CCAAATGAATCTGAGAAAGAGACGATTTCAGAGGAGGAACCATACCAGGTGGAGAATTTA 894
|||||||||| |||||||||||||||| ||||| |||||||||||||||||||||| | |
Sbjct 481 CCAAATGAATATGAGAAAGAGACGATTGCAGAGAAGGAACCATACCAGGTGGAGAACTCA 540
Query 895 GACTCTGAGATTGACAATAATGAAGAAGGAGAAGAGAAGATGAGTGAAGTCGAGAGCGAC 954
|||| || ||||| ||||||||| | |||||||||||||||||||||||||||||||
Sbjct 541 AACTCAGATATTGAGGATAATGAAG-A--AGAAGAGAAGATGAGTGAAGTCGAGAGCGAC 597
Query 955 GATGAACAT------G-----A-AGATATGATCGAAGCGGAGGTTTTAGTAGAGAAAGAA 1002
|| |||||| | | |||||||||||||||||||| ||||||||||||||||
Sbjct 598 GACGAACATGAAGAAGAACAAACAGATATGATCGAAGCGGAGGCTTTAGTAGAGAAAGAA 657
Query 1003 GTAATAGAAACTGTGAAGGAGAATAAACCAGAAGACTCGAACAGTATAGTTTCACATTCC 1062
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 658 GTAATAGAAACTGTGAAGGAGAATAAACCTGAAGACTCGAACAGTATAGTTTCACATTCT 717
Query 1063 CCGAGCATTTCTTGTCGTTCGGACACCAGCAATAACAGCATTGGTTCTTTCGCATTCCCA 1122
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 718 CCGAGCATTTCTTGTCGTTCGGACACTAGCAATAACAGCATTGGTTCTTTCGCATTCCCA 777
Query 1123 CTATTGCAAAAAGAAGATGCAGTTATTAAAACGCCGTCTGTGCAAATCAAAGGAAACCTT 1182
||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||
Sbjct 778 CTATTGCAAAAAGAAGATGCAGTTACCAAAACGCCGTCTATGCAAATCAAAGGAAACGTT 837
Query 1183 TCCCACAAGCGAAAACCTGAGTATCAGCTGCCTCAATCGCGAATGCTACTGCCACAACAG 1242
||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 838 TCCCACAAGCGAAGACCCGAGTATCAGCTGCCTCAATCGCGAATGCTACAGCCACAACAA 897
Query 1243 CAACTGCAACCTTATTCAGAATCTAGTATGCTAACTGAATCTGAGTCGGAATCA-ATCCA 1301
||||| ||||||||||||||||||| |||||||||||| ||| || ||||| || | |||
Sbjct 898 CAACTACAACCTTATTCAGAATCTAATATGCTAACTGAGTCTCAGCCGGAACCACAACCA 957
Query 1302 ACAAAGGAAGGCATCGAAAAAATTCGAATCTCCAACGCAATCGCTAAAAGCTTCAAGAAC 1361
|||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 958 -CAAAGGAAGGCATCAAAAAAATTCGAGTCTCGAACGCAATCGCTAAAAGCTTCAAGAAC 1016
Query 1362 ATGCTGGTTCTCTTGCTTCCATTGTCCTTCAAAATGCAGTAT-ATTCAAGTAG 1413
|||||||||||||||||||||||||||||||||||| || | ||||||||||
Sbjct 1017 CTGCTGGTTCTCTTGCTTCCATTGTCCTTCAAAATGCGGT-TCATTCAAGTAG 1068
> AT3G02120.1 | Symbols: | hydroxyproline-rich glycoprotein family
protein | chr3:377097-377713 FORWARD LENGTH=542
Length=542
Score = 483 bits (261), Expect = 3e-135
Identities = 327/358 (91%), Gaps = 7/358 (2%)
Strand=Plus/Plus
Query 1 ATGGAGTCGCAACAATCGAATCTTGAAACACCTCTCAAAATCCAACCCGACCACC-AAGA 59
||||||| ||||||||| ||||| |||||||||||||||| ||||| |||||||| || |
Sbjct 26 ATGGAGTTGCAACAATCAAATCTCGAAACACCTCTCAAAACCCAACACGACCACCGAA-A 84
Query 60 AATCACTACTTTGAACCCT--CT-ATCGCCACCACAACCTCTCCCTGAATCCTGCCGGAA 116
|||||| |||| |||||| | ||| || || | |||| |||| |||||| |||||||
Sbjct 85 AATCACCACTTCAAACCCTGAATCATCTCCGCCTCGACCTTTCCCGGAATCCAGCCGGAA 144
Query 117 TCATGATTCTCCTCCTCCTCGAGCATCCACCAACGAGCCAATGAAGAAAATCGGAACTCC 176
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 145 ACATGATTCTCCTCCTCCCCGAGCCTCCACCAACGAGCCAATGAAGAAAATCGGAACTCC 204
Query 177 GGATCGTTTAAGAGTCCCTATAGCTTTCAAGCACCCAGAGAGGTACAGAAGCCCAACTGA 236
||| |||||||||||||| |||||||||||| |||||||||||||||| |||||||||||
Sbjct 205 GGAGCGTTTAAGAGTCCCAATAGCTTTCAAGTACCCAGAGAGGTACAGGAGCCCAACTGA 264
Query 237 TGCAATGATGTCTCCAGTTACTAAAGGTCTTCTCGCAAGGACCAGAAAAG-CTTCTGGTT 295
||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||
Sbjct 265 TGCAATGATGTCTCCAGTTACTAAAGGTCTTCTCGCAAGGACCAG-AAAGTCTTCCGGTT 323
Query 296 CTCTTATTCCACCCAGCTTTAACCAAACCAAGATTCAAGAACTACGCAAACCGGAATC 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 324 CTCTTATTCCACCCAGCTTTAACCAAACCAAGATTCAAGAACTACGCAAACCGGAATC 381
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69628155915
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5