BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg903003 Length=1413 Score E Sequences producing significant alignments: (Bits) Value AT3G02125.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1467 0.0 AT3G02120.1 | Symbols: | hydroxyproline-rich glycoprotein fami... 483 3e-135 > AT3G02125.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: pollen tube; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G39200.1); Has 2247 Blast hits to 1434 proteins in 202 species: Archae - 4; Bacteria - 111; Metazoa - 942; Fungi - 239; Plants - 140; Viruses - 37; Other Eukaryotes - 774 (source: NCBI BLink). | chr3:378205-379612 FORWARD LENGTH=1298 Length=1298 Score = 1467 bits (794), Expect = 0.0 Identities = 985/1073 (92%), Gaps = 30/1073 (3%) Strand=Plus/Plus Query 356 AAACTGAAAATAAAGAACATCAATGGAAGCATTCGA-TGTCTTCAAGGTCATCTTCACGA 414 |||||||||| |||||||||||||||||| |||| | | ||||||||||||||||||||| Sbjct 11 AAACTGAAAACAAAGAACATCAATGGAAGGATTC-AGTTTCTTCAAGGTCATCTTCACGA 69 Query 415 TCTTCATCGATAACATCTGCTTCTTCGGATGGCCACTTTGATATCCGACACTTTCCTCTT 474 || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 70 TCGTCATCGATAACATCTGCTTCTTCGGATGGACACTTTGATATCCGACACTTTCCTCTT 129 Query 475 CCTAAGCCATCATTGTCTGCTTCTGAGGCACAGAAACTGAGAGAGTCACATCAGGCTTAT 534 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 130 CCCAAGCCATCATTGTCTGCTTCTGAGGCACAGAAACTGAGAGAGTCACATCAGGCTTAT 189 Query 535 AATTCATCTGTTAGCTCTTATACCAGTTCGTCTTGGTCCTCAAATCACCAGAACCACCTT 594 ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||| Sbjct 190 AATTCATCTGTTAGCTCATATACCAGTTCCTCTTGGTCCTCAAATCACCAGAACCATCTT 249 Query 595 GTTGATTTACCCGGTTACGATCCATCCCGAATTCCATCTTCAGTTTTCTCTAGTAAACCG 654 ||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||| Sbjct 250 ATTGATTTACCCGGTTACGATCCAACCAGAATTCCATCCTCAGTTTTCTCTAGTAAACCG 309 Query 655 GGTAATTCGACTGAATGGAGTCTAGCTTCTAATGAATCTTTGTTTAGCATCCACGATGGG 714 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 310 GGTAATTCGACGGAATGGAGTCTAGCTTCTAATGAATCTTTGTTTAGCATCCACGATGGG 369 Query 715 AATTTTAGCATTTCAACAGCATTAAGATTGGCTGAGATACCAAAATTTGAAGAAACTGTT 774 |||||||||||||||||||| || ||||||||||||||||| | |||||||||||| ||| Sbjct 370 AATTTTAGCATTTCAACAGCGTTGAGATTGGCTGAGATACCGAGATTTGAAGAAACGGTT 429 Query 775 CACGAGATAACCGAAATCAACACGGTTCCTCTTCCTCCTCCTTTACCTCCGGGTAAAAAA 834 |||| |||||||||||||||| ||||| | | | || ||| |||||||| ||| ||| Sbjct 430 CACGTGATAACCGAAATCAACTCGGTT-C-C-T-CT--TCC---ACCTCCGGTTAAGAAA 480 Query 835 CCAAATGAATCTGAGAAAGAGACGATTTCAGAGGAGGAACCATACCAGGTGGAGAATTTA 894 |||||||||| |||||||||||||||| ||||| |||||||||||||||||||||| | | Sbjct 481 CCAAATGAATATGAGAAAGAGACGATTGCAGAGAAGGAACCATACCAGGTGGAGAACTCA 540 Query 895 GACTCTGAGATTGACAATAATGAAGAAGGAGAAGAGAAGATGAGTGAAGTCGAGAGCGAC 954 |||| || ||||| ||||||||| | ||||||||||||||||||||||||||||||| Sbjct 541 AACTCAGATATTGAGGATAATGAAG-A--AGAAGAGAAGATGAGTGAAGTCGAGAGCGAC 597 Query 955 GATGAACAT------G-----A-AGATATGATCGAAGCGGAGGTTTTAGTAGAGAAAGAA 1002 || |||||| | | |||||||||||||||||||| |||||||||||||||| Sbjct 598 GACGAACATGAAGAAGAACAAACAGATATGATCGAAGCGGAGGCTTTAGTAGAGAAAGAA 657 Query 1003 GTAATAGAAACTGTGAAGGAGAATAAACCAGAAGACTCGAACAGTATAGTTTCACATTCC 1062 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 658 GTAATAGAAACTGTGAAGGAGAATAAACCTGAAGACTCGAACAGTATAGTTTCACATTCT 717 Query 1063 CCGAGCATTTCTTGTCGTTCGGACACCAGCAATAACAGCATTGGTTCTTTCGCATTCCCA 1122 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 718 CCGAGCATTTCTTGTCGTTCGGACACTAGCAATAACAGCATTGGTTCTTTCGCATTCCCA 777 Query 1123 CTATTGCAAAAAGAAGATGCAGTTATTAAAACGCCGTCTGTGCAAATCAAAGGAAACCTT 1182 ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| || Sbjct 778 CTATTGCAAAAAGAAGATGCAGTTACCAAAACGCCGTCTATGCAAATCAAAGGAAACGTT 837 Query 1183 TCCCACAAGCGAAAACCTGAGTATCAGCTGCCTCAATCGCGAATGCTACTGCCACAACAG 1242 ||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct 838 TCCCACAAGCGAAGACCCGAGTATCAGCTGCCTCAATCGCGAATGCTACAGCCACAACAA 897 Query 1243 CAACTGCAACCTTATTCAGAATCTAGTATGCTAACTGAATCTGAGTCGGAATCA-ATCCA 1301 ||||| ||||||||||||||||||| |||||||||||| ||| || ||||| || | ||| Sbjct 898 CAACTACAACCTTATTCAGAATCTAATATGCTAACTGAGTCTCAGCCGGAACCACAACCA 957 Query 1302 ACAAAGGAAGGCATCGAAAAAATTCGAATCTCCAACGCAATCGCTAAAAGCTTCAAGAAC 1361 |||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||| Sbjct 958 -CAAAGGAAGGCATCAAAAAAATTCGAGTCTCGAACGCAATCGCTAAAAGCTTCAAGAAC 1016 Query 1362 ATGCTGGTTCTCTTGCTTCCATTGTCCTTCAAAATGCAGTAT-ATTCAAGTAG 1413 |||||||||||||||||||||||||||||||||||| || | |||||||||| Sbjct 1017 CTGCTGGTTCTCTTGCTTCCATTGTCCTTCAAAATGCGGT-TCATTCAAGTAG 1068 > AT3G02120.1 | Symbols: | hydroxyproline-rich glycoprotein family protein | chr3:377097-377713 FORWARD LENGTH=542 Length=542 Score = 483 bits (261), Expect = 3e-135 Identities = 327/358 (91%), Gaps = 7/358 (2%) Strand=Plus/Plus Query 1 ATGGAGTCGCAACAATCGAATCTTGAAACACCTCTCAAAATCCAACCCGACCACC-AAGA 59 ||||||| ||||||||| ||||| |||||||||||||||| ||||| |||||||| || | Sbjct 26 ATGGAGTTGCAACAATCAAATCTCGAAACACCTCTCAAAACCCAACACGACCACCGAA-A 84 Query 60 AATCACTACTTTGAACCCT--CT-ATCGCCACCACAACCTCTCCCTGAATCCTGCCGGAA 116 |||||| |||| |||||| | ||| || || | |||| |||| |||||| ||||||| Sbjct 85 AATCACCACTTCAAACCCTGAATCATCTCCGCCTCGACCTTTCCCGGAATCCAGCCGGAA 144 Query 117 TCATGATTCTCCTCCTCCTCGAGCATCCACCAACGAGCCAATGAAGAAAATCGGAACTCC 176 ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 145 ACATGATTCTCCTCCTCCCCGAGCCTCCACCAACGAGCCAATGAAGAAAATCGGAACTCC 204 Query 177 GGATCGTTTAAGAGTCCCTATAGCTTTCAAGCACCCAGAGAGGTACAGAAGCCCAACTGA 236 ||| |||||||||||||| |||||||||||| |||||||||||||||| ||||||||||| Sbjct 205 GGAGCGTTTAAGAGTCCCAATAGCTTTCAAGTACCCAGAGAGGTACAGGAGCCCAACTGA 264 Query 237 TGCAATGATGTCTCCAGTTACTAAAGGTCTTCTCGCAAGGACCAGAAAAG-CTTCTGGTT 295 ||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||| Sbjct 265 TGCAATGATGTCTCCAGTTACTAAAGGTCTTCTCGCAAGGACCAG-AAAGTCTTCCGGTT 323 Query 296 CTCTTATTCCACCCAGCTTTAACCAAACCAAGATTCAAGAACTACGCAAACCGGAATC 353 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 324 CTCTTATTCCACCCAGCTTTAACCAAACCAAGATTCAAGAACTACGCAAACCGGAATC 381 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69628155915 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5