BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg903051
Length=861
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02500.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1122 0.0
> AT3G02500.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G16030.1);
Has 49 Blast hits to 49 proteins in 10 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:519364-521747
FORWARD LENGTH=1001
Length=1001
Score = 1122 bits (607), Expect = 0.0
Identities = 807/895 (90%), Gaps = 47/895 (5%)
Strand=Plus/Plus
Query 1 ATGGTTTTGCGTGGCGAAGAGCTTGAGTTTAACCTAAGAGAATGGGCACGAAAAGGCCAT 60
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 1 ATGGTTTTGCGTGGCGAAGAGCTTGAGTTTAATCTAAGAGAATGGGCACGACAAGGCCAT 60
Query 61 TTAACTCGCGAAGATCAAAGTTCTAGAAGGTTCTCTGCCTCTTGTATCCGAAGCTTCCGA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTAACTCGCGAAGATCAAAGTTCTAGAAGGTTCTCTGCCTCTTGTATCCGAAGCTTCCGA 120
Query 121 GAAGACCACAAGTCGACGTCTTGTACAACAAACTTCACCATCTCTAGTACTGCCTCTTCT 180
||||||||| | | |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 121 GAAGACCAC-A----A-GTCTTGTACAACAAACGTCACCATCTCTAGTACTGCCTCTTCT 174
Query 181 CCCGGTTACTCGCTCAAAGGTGATGAGATTGACCCATCAAATTATTCCTTCACTAGTGCA 240
|| |||||||| |||||| |||||||| || ||||||||||||||||||| |||||||
Sbjct 175 CCGGGTTACTCCCTCAAA---GATGAGATCGATCCATCAAATTATTCCTTCAGTAGTGCA 231
Query 241 CTCAAGGCATTGCAAGAAAAAACAGTGTACAAGAAGAATTGGGATTGGTTGAAACCAGAA 300
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 232 CTCAAGGCATTGCAAGCAAAATCAGTGTACAAGAAGAATTGGGATTGGTTGAAACCAGAA 291
Query 301 GGAGTTGAGCTAAACTCGAAATGGAACGAAGCAGAGAAGTATATTTGCAATCCTTTGTCT 360
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 292 GGAGTTGAGCTAAACTCGAAATGGAACGAAGCAGAGAAGTATATATGCAATCCTTTATCT 351
Query 361 GGTGAAGTTCCTTTGGAGTGTTTGTCTTCTAAAACCCTAAATTCAAGATCTTTTAGAAAC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 352 GGTGAAGTTCCTTTGGAGTGTTTGTCTTCTAAAACCCTAAATTCAAGATCTTTCAGAAAC 411
Query 421 TTATCCACCATGCATGCTCCACTCATGATTTTACCTTCTAATCCTAATCCCAACATTCCA 480
|||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 412 TTATCCACCAAGCATGCTCCACTCATGATTTTACCTTCTAATTATAATCTCAACATTCCA 471
Query 481 AGAA---TCA-TCC-AC-G--AGGATC---C-T-A--A----A-A-CTCCCGATCCTGTT 519
|||| | | ||| | | || ||| | | | | | | ||||||||||||||
Sbjct 472 AGAACGGTTAATCCTAAAGTTAGAATCATTCATGAGGATCCTAGATCTCCCGATCCTGTT 531
Query 520 CTTATTCAAGaaaaaaaaGTTGTGGGGTCAAAACGAGATGTCGTTAGTGCACCGGAAAAT 579
|| |||||||| || |||||||||||||| |||||||||||||| ||||||| || ||||
Sbjct 532 CTAATTCAAGATAAGAAAGTTGTGGGGTCTAAACGAGATGTCGTGAGTGCACAGGGAAAT 591
Query 580 GTTAGTGCAGTGAAGACGACGCCGATCATGGAGAGATCGACGAAAAGACAGGTGGAAGCT 639
|||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 592 GTTAGTGCAGCAAAGACGACGCCGATCATGGAGAGATTAACGAAAAGACAGGTGGGAGCT 651
Query 640 GATGATTCGCATGTTGAGTATGCACTAAAGTTGAAAGCTCAACAAGAGGATGTGAAGTTa 699
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 GATGATTCGCCTGTTGAGTATGCACTAAAGTTGAAAGCTCAACAAGAGGATGTGAAGTTA 711
Query 700 gaagaaaaggagcaaaatatgatgacaaaagaaattc--ga-gaa--gaaa-agaa-aag 752
|||||||| |||||||||||||||||||||||||||| || ||| |||| |||| |||
Sbjct 712 GAAGAAAATGAGCAAAATATGATGACAAAAGAAATTCAAGAAGAAAAGAAAGAGAAGAAG 771
Query 753 a-g-gaagTGG--GTG--TTTCTCAATGTCATGGAAAAAGAAAATGCAAAAACAACCAAG 806
| | |||| || ||| ||| || | |||||| || ||||||||||| |||||||||
Sbjct 772 AAGAGAAGAGGAAGTGGGTTT-TCC-T--CATGGATAAGGAAAATGCAAAGACAACCAAG 827
Query 807 AACATCCAAATGCATATTTCTCATTTGTCTTCCTCATCTTTTCAAAGCTTCTTGA 861
|| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 828 AAAATCCAAATGCATATTTCTCATTTGTCTTCCTCATCTTATCAAAGCTTCTTGA 882
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41995746892
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5