BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg903064
Length=1242
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02610.1 | Symbols: | Plant stearoyl-acyl-carrier-protein d... 1951 0.0
AT3G02620.1 | Symbols: | Plant stearoyl-acyl-carrier-protein d... 1701 0.0
> AT3G02610.1 | Symbols: | Plant stearoyl-acyl-carrier-protein
desaturase family protein | chr3:555626-557723 FORWARD LENGTH=1444
Length=1444
Score = 1951 bits (1056), Expect = 0.0
Identities = 1181/1243 (95%), Gaps = 2/1243 (0%)
Strand=Plus/Plus
Query 1 ATGACGATGGCTCTTCTCTTCAACTCGACGATGACGGTGGCTATGAAGCAGAATCCCGC- 59
|||| ||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||
Sbjct 40 ATGAAGATGGCTCTTCTCTTGAACTCGACGATAACGGTGGCTATGAAGCAGAAT-CCGCT 98
Query 60 AGTCACGGTATCTTTTCCGCCGCCTGCTTGCTTGGGATATAGTTATTCTCCTCCTCGTCG 119
||| ||||||||||||||| | || |||||||||||| ||||| ||||||||||||||
Sbjct 99 GGTCGCGGTATCTTTTCCGCGGACTACTTGCTTGGGATCTAGTTTTTCTCCTCCTCGTCT 158
Query 120 TCTTCGAGTTTCGTGTGTTGCCACAAACCCTAGCAAGACGAGTGAAGAAACAGACAAGAA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 159 TCTTCGAGTTTCGTGTGTTGCCACAAACCCTAGCAAGACGAGTGAAGAAACAGACAAGAA 218
Query 180 AAAGTTTCGACCCATCAAAGAAGTATCAAACCAAGTGACACACACAATAACACAAGAGAA 239
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 219 AAAGTTTCGACCCATCAAAGAAGTACCAAACCAAGTGACCCACACAATAACACAAGAGAA 278
Query 240 GCTCGAAATCTTCAAATCAATGGAGAGTTGGGCCCAAGAAAACTTATTATCTTACCTCAA 299
|| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 279 ACTGGAGATCTTCAAATCAATGGAGAATTGGGCCCAAGAAAACTTATTATCTTACCTCAA 338
Query 300 ACCCGTCGAAGCTTCATGGCAACCACAAGACTTTCTGCCGGAAACCAACGACGAAGACCG 359
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 339 ACCCGTCGAAGCTTCCTGGCAACCACAAGACTTTTTGCCGGAAACCAACGACGAAGACCG 398
Query 360 ATTCTACGAGCAAGTGAAAGACCTAAGAAATCGAACAAGAGAGATCCCTGACGATTACTT 419
||||||||| ||||| ||||| |||||| ||||||||| |||||||||||||||||||||
Sbjct 399 ATTCTACGAACAAGTAAAAGAGCTAAGAGATCGAACAAAAGAGATCCCTGACGATTACTT 458
Query 420 TGTAGTTCTTGTCGGAGATATGATCACCGAAGAAGCATTACCGACTTATCAAACGACTTT 479
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 459 TGTAGTTCTTGTCGGAGATATGATCACCGAAGAAGCTTTACCAACTTATCAAACTACTTT 518
Query 480 GAACACTCTCGACGGCGCCAAAGACGAGACCGGTGGGAGTCTAACACCGTGGGCGGTTTG 539
||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||
Sbjct 519 GAACACTCTCGACGGCGTAAAAGACGAGACCGGTGGTAGTCTAACGCCGTGGGCGGTTTG 578
Query 540 GGTTAGAGCGTGGACGGCGGAGGAAAATCGACACGGCGATTTGTTGAATAAGTATCTTTA 599
|||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 579 GGTTCGAGCATGGACGGCGGAGGAAAATCGACACGGTGATTTGTTGAATAAGTATCTTTA 638
Query 600 CTTATCGGGTCGTGTTGATATGCGACATGTTGAAAAGACTATTCAATATCTTATCGGATC 659
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 639 CTTATCAGGTCGTGTTGACATGCGACATGTTGAAAAGACTATTCAATATCTTATCGGATC 698
Query 660 CGGCATGGACTCCAAATTTGAAAACAATCCTTACAATGGCTTCATCTACACTTCTTTTCA 719
||||||||||||||||||||| |||||||| || |||||||||||||| |||||||||||
Sbjct 699 CGGCATGGACTCCAAATTTGAGAACAATCCCTATAATGGCTTCATCTATACTTCTTTTCA 758
Query 720 AGAGAGAGCCACTTTTATCTCCCACGGCAACACGGCGAAGCTAGCCACGACCTACGGCGA 779
||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 759 AGAGAGAGCCACTTTCATCTCCCATGGCAACACGGCGAAGCTAGCCACAACCTACGGCGA 818
Query 780 CACAACTCTCGCCAAAATCTGCGGAACAATCGCGGCGGACGAGAAGCGGCACGAGACGGC 839
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 819 CACAACTCTCGCCAAAATCTGCGGAACAATCGCGGCGGATGAGAAGCGGCATGAGACGGC 878
Query 840 GTACACACGGATCGTCGAGAAGCTATTCGAGATCGATCCCGATGGTACCGTACAAGCTCT 899
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 879 GTATACACGGATCGTCGAGAAGCTTTTCGAGATCGATCCCGATGGTACCGTACAAGCTCT 938
Query 900 AGCGAGTATGATGAAGAAGCGAATCACGATGCCGGCTCATCTGATGCACGACGGTCGCGA 959
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 939 AGCGAGTATGATGAGGAAGCGAATCACGATGCCGGCTCATCTGATGCACGACGGTCGCGA 998
Query 960 CGACGATCTGTTCGATCATTACGCCGCCGTGGCGCAGAGAATCGGAGTTTACACCGCGAC 1019
|||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct 999 CGACGATCTGTTCGATCATTACGCTGCGGTGGCGCAGAGAATCGGAGTTTATACCGCGAC 1058
Query 1020 GGATTACGCCGGGATTTTGGAGTTTTTGTTGCGACGGTGGGAGGTGGAGAAGTTAGGGAT 1079
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1059 GGATTACGCAGGGATTTTGGAGTTTTTGTTGCGGCGGTGGGAGGTGGAGAAGTTAGGGAT 1118
Query 1080 GGGTTTGTCCGGTGAAGGAAGGAGAGCACAAGATTATCTGTGTACCTTGCCGCAGAGGAT 1139
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1119 GGGTTTGTCCGGCGAAGGAAGGAGAGCACAGGATTATCTGTGTACCTTGCCGCAGAGGAT 1178
Query 1140 CAGGAGGTTAGAGGAAAGAGCTAACGATAGAGTCAAACTCGGGTCAAAGTCAAAACCTTC 1199
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1179 CAGGAGGTTAGAGGAAAGAGCTAACGATAGAGTCAAACTTGCGTCAAAGTCAAAACCTTC 1238
Query 1200 TGTCTCCTTCAGCTGGATTTACGGGAGAGGAGTTGAACTATAA 1242
||| ||||||||||||||||| ||||||| |||||||||||||
Sbjct 1239 TGTTTCCTTCAGCTGGATTTATGGGAGAGAAGTTGAACTATAA 1281
> AT3G02620.1 | Symbols: | Plant stearoyl-acyl-carrier-protein
desaturase family protein | chr3:560256-561880 FORWARD LENGTH=1332
Length=1332
Score = 1701 bits (921), Expect = 0.0
Identities = 1138/1239 (92%), Gaps = 30/1239 (2%)
Strand=Plus/Plus
Query 7 ATGGCTCTTCTCTTCAACTCGACGATGACGGTGGCTATGAAGCAGAATCCCGCAG-TCAC 65
|||||||| ||||| |||||||||||||| ||||||||||||||||||||||| | | |
Sbjct 1 ATGGCTCTGCTCTTGAACTCGACGATGACTGTGGCTATGAAGCAGAATCCCGC-GACCGC 59
Query 66 GGTATCTTTTCCGCCGCCTGCTTGCTTGGGATATAGTTATTCTCCTCCTCGTCGTCTTCG 125
|||||||||| || | || |||| ||||||| ||||| |||||||||||||| |||||
Sbjct 60 GGTATCTTTTATGCAGACTACTTGTTTGGGATCTAGTTTTTCTCCTCCTCGTCATCTTCA 119
Query 126 AGTTTCGTGTGTTGCCACAAACCCTAGCAAGACGAGTGAAGAAACAGACAAGAAAAAGTT 185
|||||||||||||||||| ||||| | || | | |||| |||
Sbjct 120 AGTTTCGTGTGTTGCCACTAACCC--G--AG-C----------A-AGAC--------GTT 155
Query 186 TCGACCCATCAAAGAAGTATCAAACCAAGTGACACACACAATAACACAAGAGAAGCTCGA 245
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 156 TCGACCCATCAAAGAAGTATCAAACCAAGTGACACACACAATAACACAAGAGAAACTGGA 215
Query 246 AATCTTCAAATCAATGGAGAGTTGGGCCCAAGAAAACTTATTATCTTACCTCAAACCCGT 305
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 216 GATCTTCAAATCAATGGAGAATTGGGCCCAAGAAAACTTATTATCTTACCTCAAACCCGT 275
Query 306 CGAAGCTTCATGGCAACCACAAGACTTTCTGCCGGAAACCAACGACGAAGACCGATTCTA 365
|||| ||||||||||||||||||||||| |||| |||||||| |||||||||||||||||
Sbjct 276 CGAAACTTCATGGCAACCACAAGACTTTTTGCCAGAAACCAAAGACGAAGACCGATTCTA 335
Query 366 CGAGCAAGTGAAAGACCTAAGAAATCGAACAAGAGAGATCCCTGACGATTACTTTGTAGT 425
||| ||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 336 CGAACAAGTGAAAGAGCTAAGAGATCGAACAAAAGAGATCCCTGACGATTACTTTGTAGT 395
Query 426 TCTTGTCGGAGATATGATCACCGAAGAAGCATTACCGACTTATCAAACGACTT-TGAACA 484
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 396 TCTTGTCGGAGATATGATCACCGAAGAAGCATTACCGACTTATCAAACGG-TTATGAACA 454
Query 485 CTCTCGACGGCGCCAAAGACGAGACCGGTGGGAGTCTAACACCGTGGGCGGTTTGGGTTA 544
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 455 CTCTCGACGGAGCCAAAGACGAGACCGGTGTTAGTCTAACACCGTGGGCGGTTTGGCTTA 514
Query 545 GAGCGTGGACGGCGGAGGAAAATCGACACGGCGATTTGTTGAATAAGTATCTTTACTTAT 604
|||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 515 GAGCATGGACGGCGGAGGAAAATCGACACGGTGATTTGTTGAATAAGTACCTTTACTTAT 574
Query 605 CGGGTCGTGTTGATATGCGACATGTTGAAAAGACTATTCAATATCTTATCGGATCCGGCA 664
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 575 CAGGTCGTGTTGATACGCGACATGTTGAAAAGACTATTCAATATCTTATCGGATCCGGCA 634
Query 665 TGGACTCCAAATTTGAAAACAATCCTTACAATGGCTTCATCTACACTTCTTTTCAAGAGA 724
||||| |||||| ||| |||||||| ||||| |||| |||||||||||||||||||||||
Sbjct 635 TGGACACCAAATATGAGAACAATCCCTACAACGGCTACATCTACACTTCTTTTCAAGAGA 694
Query 725 GAGCCACTTTTATCTCCCACGGCAACACGGCGAAGCTAGCCACGACCTACGGCGACACAA 784
|||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 695 GAGCAACTTTTATCTCCCACGCCAACACGGCGAAGCTAGCCACGACATACGGCGACACAA 754
Query 785 CTCTCGCCAAAATCTGCGGAACAATCGCGGCGGACGAGAAGCGGCACGAGACGGCGTACA 844
|||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||| |
Sbjct 755 CTCTCGCCAAAATCTGTGGAACAATCGCGGCGGATGAGAAGCGGCACGAGATGGCGTATA 814
Query 845 CACGGATCGTCGAGAAGCTATTCGAGATCGATCCCGATGGTACCGTACAAGCTCTAGCGA 904
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 815 CGCGGATCGTCGAGAAGCTATTCGAGATTGATCCCGATGGTACCGTACAAGCTCTAGCGA 874
Query 905 GTATGATGAAGAAGCGAATCACGATGCCGGCTCATCTGATGCACGACGGTCGCGACGACG 964
||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 875 GTATGATGAGGAAGCGAATCACGATGCCGGCTCAGCTGATGCACGACGGTCGCGATGACA 934
Query 965 ATCTGTTCGATCATTACGCCGCCGTGGCGCAGAGAATCGGAGTTTACACCGCGACGGATT 1024
||||||||||||||||||| || |||||||||||||||||||| || |||||||||||||
Sbjct 935 ATCTGTTCGATCATTACGCTGCTGTGGCGCAGAGAATCGGAGTGTATACCGCGACGGATT 994
Query 1025 ACGCCGGGATTTTGGAGTTTTTGTTGCGACGGTGGGAGGTGGAGAAGTTAGGGATGGGTT 1084
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 995 ACGCAGGGATTTTGGAGTTTTTGTTGCGGCGGTGGGAGGTGGAGAAGTTAGGGATGGGTT 1054
Query 1085 TGTCCGGTGAAGGAAGGAGAGCACAAGATTATCTGTGTACCTTGCCGCAGAGGATCAGGA 1144
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1055 TGTCCGGTGAAGGAAGGAGAGCACAGGATTATCTGTGTACCTTGCCGCAGAGGATCAGGA 1114
Query 1145 GGTTAGAGGAAAGAGCTAACGATAGAGTCAAAC-TCGGGTCAAAGTCAAAACCTTCTGTC 1203
||||||||||||||||| ||||||||||||||| | | ||||||||| |||||||||||
Sbjct 1115 GGTTAGAGGAAAGAGCTGACGATAGAGTCAAACGT-GCGTCAAAGTCTAAACCTTCTGTT 1173
Query 1204 TCCTTCAGCTGGATTTACGGGAGAGGAGTTGAACTATAA 1242
|| |||||||||||||||||||||| ||||||||| |||
Sbjct 1174 TCGTTCAGCTGGATTTACGGGAGAGAAGTTGAACTCTAA 1212
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61043862720
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5