BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg903067
Length=3276
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02650.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2645 0.0
AT3G02645.1 | Symbols: | Plant protein of unknown function (DU... 2364 0.0
> AT3G02650.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:568047-570103 FORWARD LENGTH=2057
Length=2057
Score = 2645 bits (1432), Expect = 0.0
Identities = 1644/1741 (94%), Gaps = 36/1741 (2%)
Strand=Plus/Plus
Query 1539 ATCGCAAAATGCGTCTAGGAATCTCGCCGTTACTCGAATCTCGAAGAAGAAGACCCAGAC 1598
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 112 ATCGCAAAATGCGTCTCGGAATCTCGCTGTTACTCGAATCTCGAAGAAGAAGACCCAGAC 171
Query 1599 GACTCCA-TCGCTAACCTCTCTTTCGAGATTCTCATATCTCGAGTCGTCTGGAGATGCTT 1657
|||| || ||||| ||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 172 GACT-CATTCGCTTACCTCTCTTTCGAGATTTTCATATCTCGAGTCGTCTGGAAATGCTT 230
Query 1658 CTAACCGAAACATCAGGTTCTTCTCCGCGAGCCCTCCTACAGAAGAGAACCCAGTTTCTT 1717
|| ||||||||||||||||||||| ||||||||||||| |||||||||||||| || |
Sbjct 231 CTGTTCGAAACATCAGGTTCTTCTCCACGAGCCCTCCTACGGAAGAGAACCCAGTCTCGT 290
Query 1718 TACC-GACGGATGAGATCCCAATCTCGTCAGCCGCAGAGCTTACCCTTGAAGAATCGGTT 1776
|||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 TACCTG-CCGATGAGATCCCAATCTCGTCAGCCGCAGAGCTTACCCTTGAAGAATCGGTT 349
Query 1777 GCTTCCGCTTTGGGATTTTCAGAAAGTGGCGATTTTGGTGTAAATGGTGGTACTTCCGTG 1836
|||||||||||||||||||||||||||||||| | | |||||||||||||||||
Sbjct 350 GCTTCCGCTTTGGGATTTTCAGAAAGTGGCGA------T-T--ATGGTGGTACTTCCGTG 400
Query 1837 GAAGCCGTTGGTGGTGTTTCTGAAGATGGAGATTCAGAGATTGTTGCAATTGAAAACGAG 1896
|||| | | || || |||||||||||||||||||||||||||||| |||||||||
Sbjct 401 GAAG-C--T-GT--TG---GTGAAGATGGAGATTCAGAGATTGTTGCAATAGAAAACGAG 451
Query 1897 GTTAGCGAGGTGTACCAATTTGATGACGAAAAGTTGGAATCTGTACTGTCTTTGTTACGG 1956
| | | ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 452 G-T-------T-TACCAATTTGATGACGAAAAGCTGGAATCTGTACTGTCTTTGTTACGG 502
Query 1957 AGTGATGAAGAGTCCTTGGAGTTTGGTCTTAATGCGCTTAATGTTGATTTACATTTAGAT 2016
||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 503 AGTGATGAAGAATCCTTGGAGTTTGGTCTTAATGCGCTTAATGTCGATTTACACTTAGAT 562
Query 2017 TTTGTGGTAAGAGTGTTTGAATCCCCAGGAATTTCCGGTAAGAATTTGATTAGGTTTTTA 2076
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 563 TTTGTGGTAAGAGTGTTTGAATCCCCAGGAATTTCAGGTAAGAATTTGATTAGGTTTTTG 622
Query 2077 AAGTGGGCAACTGAGAGA-GAAGAGATTACTGTTACAACCTCACTTGTAGAATCTCTTCT 2135
|||||||||||| ||| | ||||||||||||||||| ||||| |||||||||||||||||
Sbjct 623 AAGTGGGCAACTCAGA-ATGAAGAGATTACTGTTACCACCTCGCTTGTAGAATCTCTTCT 681
Query 2136 TGTAGCAATTGCTGGTGATACACGTCGAATGGATGCTTATGGTTTGTGGGATTTGGTTAA 2195
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 682 TGTAGCAATTGCTAGTGATACACGTAGAATGGATGCTTATGGTTTGTGGGATTTGGTTAA 741
Query 2196 GGAGATTGGTGAGAAGGAGAGTAGTAGTAGTGTTTTGAATTTGGAGATATTGAATGAATT 2255
|||||| |||||||| |||| ||| || ||||||||||||||||||||||||||||| |
Sbjct 742 GGAGATAGGTGAGAA--AGAG-AGTTGTGGTGTTTTGAATTTGGAGATATTGAATGAACT 798
Query 2256 GATTGCCTTGTTTGGGAAACTTGGTAAATCCAAAGCTGCTTTTGATGTGTTTAGTAAAAC 2315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 799 GATTGCCTTGTTTGGGAAACTTGGTAAATCCAAAGCTGCTTTTGATGTGTTTAGTAAGAC 858
Query 2316 CGCAGAGTTTGGTTTTACTCCGAATGCGAAAACGTATTATTTGACACTGGAGGCGCTTTG 2375
|| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 859 CGAAGAGTTTGGGTTTACTCCGAATGCGAAAACATATTATTTGACACTGGAGGCGCTTTG 918
Query 2376 TAAGCGGTCGTTTATGGATTGGGCATGCTCTGTATGTGAGAAAATGCTTAAGAGTGGTGT 2435
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 919 TAAGCGGTCGTTTATGGATTGGGCATGTTCTGTATGTGAGAAAATGCTTAAGAGTGGTGT 978
Query 2436 GTTACCTGAGGGAGAACAGATGGGTAACATCATATCTTGGTTTAGTAAGGAAGGGAAGGC 2495
|||| | ||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 979 GTTATCGGAGGGAGAACAGATGGGTAACATCATAACTTGGTTTTGTAAGGAAGGGAAGGC 1038
Query 2496 CGAAGAGGCTTATTCGGTTTACGAATTGGCAAAGACGAAAGAGAAATCTCTGCCTCCTAG 2555
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1039 CGAAGAGGCTTATTCGGTTTATGAATTGGCAAAGACGAAAGAGAAATCTTTGCCTCCTAG 1098
Query 2556 ATCTGTGGCTACTCTGATAAGTGCTCTCTGCAAGAATGATGGGACTATCACGTTTGCTCA 2615
|| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 1099 ATTTGTGGCTACTCTGATAACTGCACTCTGCAAGAATGATGGGACTATCACGTTTGCTCA 1158
Query 2616 GGAGATGTTGGGTGATTTATCTGGAGAAGCTAGGCGACGTGGGATAAAACCATTTTCTGA 2675
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1159 GGAGATGTTGGGTGATTTATCTGGAGAAGCTAGACGACGTGGGATAAAACCATTTTCTGA 1218
Query 2676 TGTTATCCATAGTTTATGCAGGATGAGAAATGTTAAAGACGCTAAAGCTTTGCTTTTGGA 2735
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1219 TGTTATCCATAGTTTATGCAGAATGAGAAATGTTAAAGACGCTAAAGCTTTGCTTTTAGA 1278
Query 2736 TATGATTTCTAAAGGGCCTGCTCCTGGGAATGCGGTTTTTAATTTGATTGTCCATGCTTG 2795
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1279 TATGATTTCTAAAGGGCCTGCTCCTGGGAATGCGGTTTTTAATTTGGTTGTCCATGCTTG 1338
Query 2796 TTCGAAAACTGGAGATCTGGATGAAGCAAAAGAGGTTTTGAAGTTGATGGAGAGTAGAGG 2855
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1339 TTCGAAAACTGGAGATCTGGATGAAGCAAAAGAAGTTTTAAAGTTGATGGAGAGTAGAGG 1398
Query 2856 TTTGAAACCAGATGTGTACACATACACTGTCATCATTAGTGGTTATGCTAAAGGAGGGCT 2915
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 1399 TTTGAAACCAGATGTGTACACATACACTGTCATCATTAGCGGTTATGCTAAAGGAGGGAT 1458
Query 2916 GATGAATGAAGCTCAAGAGATTCTCGCAGAGGCGAAAAAGAAACATAAGAAGCTTAGTCC 2975
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1459 GATGGATGAAGCTCAAGAGATTCTCGCAGAGGCGAAAAAGAAACATAAGAAGCTTAGTCC 1518
Query 2976 TGTGACATATCACGCACTCATCCGAGGCTATTGCAAGATTGAAGAATATGACGAAGCTCT 3035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1519 TGTGACATATCACGCACTCATCCGAGGCTATTGCAAGATTGAAGAATATGACGAAGCTCT 1578
Query 3036 GAAACTTTTGAAAGAAATGGATCGTTTCGGGGTGCAGCCTAATGCTGATGAGTACAATAA 3095
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1579 GAAACTCTTGAACGAAATGGATCGTTTCGGGGTGCAGCCTAATGCTGATGAGTACAATAA 1638
Query 3096 GCTGATACAGTCATTTTGCCTCAAAGCTTTGGATTGGGAAAAAGCAGAGATGCTGTTTGA 3155
||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1639 GCTGATACAATCATTTTGCCTCAAAGCTCTGGATTGGGAAAAAGCAGAGGTGCTGTTTGA 1698
Query 3156 GGAGATGAAGCAGAAAGGCTTGCACTTGAATGCAATTAGTCAGGGGCTTATAAGGGCAGT 3215
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1699 GGAGATGAAGCAGAAAGGCTTGCACTTGAATGCGATCAGTCAGGGGCTTATAAGGGCAGT 1758
Query 3216 TAAAGAGATGGAATCTGAAGCCAAGGTAACGGAAGATGACAACTTACTTGCTGAAGCATA 3275
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1759 TAAAGAGATGGAATCTGAAGCCAAGGTAACGGAAGATGGCAACTTACTTGCTGAAGCATA 1818
Query 3276 G 3276
|
Sbjct 1819 G 1819
> AT3G02645.1 | Symbols: | Plant protein of unknown function (DUF247)
| chr3:566271-567860 FORWARD LENGTH=1590
Length=1590
Score = 2364 bits (1280), Expect = 0.0
Identities = 1456/1540 (95%), Gaps = 16/1540 (1%)
Strand=Plus/Plus
Query 1 ATGTTACCTAAAAAACCAATTATTTCATCTGCAGAGCAACACAGTTTTGACGAAACTCGA 60
||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||
Sbjct 1 ATGTTACCTAAAAAACCAATTTTTTCATCTACAGAGCAACACAGGTTTGACGAAACTCGA 60
Query 61 TGGGTCATCAATGTCCAAAAATCTCTCGATGCAGAGATCGAAGAACACGATCTCGAAGAA 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 61 TGGGTCATCAATGTCCAAAAATCTCTCGATGCAGAGCTCGAAGAACACGATCTCGAAGAA 120
Query 121 GTCACAGTCAGCATTTTCAATGTTCCTAAAGCATTAATGTGTAGCCATCCAGATTCATAC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTCACAGTCAGCATTTTCAATGTTCCTAAAGCATTAATGTGTAGCCATCCAGATTCATAC 180
Query 181 ACACCTCACCGGGTTTCGATCGGACCTTATCATTGTCTAAACCCAGAGCTTCACGAAATG 240
||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 181 ACACCTCACCGAGTTTCGATCGGACCTTATCACTGTCTAAAACCAGAGCTTCACGAAATG 240
Query 241 GAAAGGTATAAACTAATGATCGCGAGAAAAACTCGAAATCAAGCCAAATCTTTCAAGTTT 300
|| |||||||||||||||||||||||||||| |||||||||| || ||||||| ||||
Sbjct 241 GAGAGGTATAAACTAATGATCGCGAGAAAAATTCGAAATCAATATAACTCTTTCAGGTTT 300
Query 301 CATGATCTTGTAGAGAAATTACAATCCATTGAGATTAAGATTCGAGCTTGTTATCATAAG 360
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 301 CATGATCTTGTAGAGAAATTACAATCCATGGAGATTAAGATTCGAGCTTGTTATCATAAG 360
Query 361 TATATAGGGTTTAACGGAGAGACTCTGTTATGGATAATGGCGGTAGATTCATCGTTCTTG 420
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 361 TATATCGGGTTTAACGGAGAGACTCTGTTGTGGATAATGGCGGTAGATTCATCGTTCTTG 420
Query 421 ATCGAGTTTCTTAAGATTTACAGTTTTAGAAAGGTGGAGACTTTGATTAATAGAGTTGGG 480
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 421 ATCGAGTTTCTTAAGATTTACAGTTTTAGAAAGGTGGAGACTTTGATTAACAGAGTTGGT 480
Query 481 CATAACGAGATTCTTAGAGATATAATGATGATCGAGAACCAAATCCCACTTTTTGTTTTG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 481 CATAACGAGATTCTTAGAGATATAATGATGATCGAGAACCAAATCCCACTTTTCGTTTTG 540
Query 541 AGGAAAACACTTGAGTTTCAGCTAGAATCGACTGAATCAGCTGATGATCTGTTGGTCTCT 600
||||||||||| ||||||||||| |||||||||||||||||||||||||| || |||||
Sbjct 541 AGGAAAACACTCGAGTTTCAGCTTGAATCGACTGAATCAGCTGATGATCTACTGCTCTCT 600
Query 601 GTTCTTACGGGACTATGCAGAGATCTCTCTCCTCTCGTCATCAAATTCGACGATGATGAG 660
||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||| ||
Sbjct 601 GTTCTTACGGGTCTATGCAAAGATCTCTCTCCTCTCGTTATCAAATTCGACGATGATCAG 660
Query 661 ATTCTGAAGGCTCAGTTTCATGAGTGTAATCATATCTTAGACTTCTTGTATCAGATGATC 720
||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 661 ATTTTGAAGGCTCAGTTTCAAGAGTGTAATCATATCTTAGACTTCTTGTATCAGATGATC 720
Query 721 GTTCCGAGGATCgaagaagaagagctagaagaagaagaagacgaagaaAACAGAGCAGAC 780
|||||||| |||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 721 GTTCCGAGAATCGAAGAAGAAGAGCTAGAAGAAGATGA---CGAAGAAAACAGAGCAGAC 777
Query 781 GACAATGGCGGAAACAGAGCAATTAGGTTTCTGGAAGAGATTAAGCATCAATTCAAAAGG 840
|| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 778 GAAAATGGCGGAAACAGAGCAATTAGGTTTATGGATGAGATTAAGCATCAATTCAAAAGG 837
Query 841 GTTTTCGCATCTCGACCTGCGGATTTAATCTTGAGATTCCCGTGGAGAATCATATCGAAT 900
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GTTTTCGCGTCTCGACCTGCGGATTTAATCTTGAGATTCCCGTGGAGAATCATATCGAAT 897
Query 901 CTTCCTGGATTCATGGCACTGAAACTTTCAGCTGATTATCTCTTCACAGGACAAGAAAAC 960
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 898 CTTCCTGGATTCATGGCTCTGAAACTTTCAGCTGATTATCTCTTCACAAGACAAGAAAAC 957
Query 961 GAAGCAACAACAACGAGACGAGAATCA-TCATCATCGGTTTCGGCTTCCGATATCGAAAA 1019
||||||||||||||||||| |||||| | | ||| || | || |||||||||||
Sbjct 958 GAAGCAACAACAACGAGACAAGAATCGGT--T--TCGATT-C---TT--GATATCGAAAA 1007
Query 1020 GCCTCCTCTTGTGGAAGAACTGACAATCCCGTCAGTCTCCGATCTCCACAAAGCCGGAGT 1079
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1008 GCCTCCTCTTGTGGAAGAACTTACAATCCCATCAGTCTCCGATCTCCACAAAGCCGGAGT 1067
Query 1080 TCGATTCAAACCAACAGCAAACGGGAACATTTCAACAGTAACTTTCGATTCAAACTCGGG 1139
| ||||||||||||||||| |||| ||||||||||| |||||||||||||||||||| ||
Sbjct 1068 TAGATTCAAACCAACAGCACACGGTAACATTTCAACGGTAACTTTCGATTCAAACTCTGG 1127
Query 1140 TCAGTT-TCACCTCCCTGTGATAAACCTAGATATCAACACAGAAACCGTTCTACGAAACC 1198
|| || | |||||||||| ||||||||||| |||||||||||||| || || || ||||
Sbjct 1128 CCAATTCT-ACCTCCCTGTAATAAACCTAGACATCAACACAGAAACAGTCCTTCGGAACC 1186
Query 1199 TTGTCGCTTACGAAGCTACAAACACTTCAGGACCATTAGTGTTCACTCGTTACACAGAGC 1258
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1187 TTGTCGCTTACGAAGCTACGAACACTTCAGGACCATTAGTATTCACTCGTTACACAGAGC 1246
Query 1259 TAATAAACGGAATAATCGATTCGGAAGAAGACGTTAGGTTGCTTAGAGAACAAGGCGTCC 1318
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1247 TAATAAACGGAATAATAGATTCGGAAGAAGACGTTAGGTTGCTTAGAGAACAAGGCGTTC 1306
Query 1319 TTGTGAGCCGTCTCAAGAGTGACCAAGAAGCTGCAGAGATGTGGAATGGTATGAGCAAAT 1378
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1307 TTGTGAGCCGTCTCAAGAGTGATCAAGAAGCTGCAGAGATGTGGAATGGTATGAGCAAAT 1366
Query 1379 CTGTGAGGTTGACCAAAGTTGGTTTTTTGGATAAGACTATTGAGGATGTTAACCGATATT 1438
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1367 CTGTGAGGTTGACCAAAGTTGGTTTTTTGGATAAGACTATCGAGGATGTTAACCGTTATT 1426
Query 1439 ATACCGGACGGTGGAAAGTGAAGATTGGAAGATTGGTTGAGGTTTACGTTTATGGTTCTT 1498
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1427 ATACCGGACGGTGGAAAGTGAAGATCGGAAGATTGGTTGAGGTTTATGTTTATGGTTCTT 1486
Query 1499 GGCAGATTCTTGCTTTTTTGGCGGCGGTTTTGTTGTTGAT 1538
|||||||||| || ||||||||||||||||||||||||||
Sbjct 1487 GGCAGATTCTAGCGTTTTTGGCGGCGGTTTTGTTGTTGAT 1526
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 162992397807
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5