BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg903069

Length=666
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G02670.1 | Symbols:  | Glycine-rich protein family | chr3:57...   176    2e-43


> AT3G02670.1 | Symbols:  | Glycine-rich protein family | chr3:573780-574626 
REVERSE LENGTH=847
Length=847

 Score =  176 bits (95),  Expect = 2e-43
 Identities = 141/161 (88%), Gaps = 12/161 (7%)
 Strand=Plus/Plus

Query  319  GGTATTCCCGGTATTCCTGGTTCCCCTGGCTTTAGGCTTCCGTTTCCATTTCCATCATCA  378
            ||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct  385  GGTCTTCCCGGTATTCCTGGTTCCCCTGGCTTTAGGCTTCCGTTTCCATTCCCGTCATCA  444

Query  379  CC---AGGAGG---TATTCCCGGTATTCGTGGTTCCCCTGGCTTTAGACTTCCGTTTCCA  432
            ||   ||||||   ||||||||||||||  ||||| ||||| ||||||||||||||||||
Sbjct  445  CCTGGAGGAGGAAGTATTCCCGGTATTCCCGGTTCGCCTGGTTTTAGACTTCCGTTTCCA  504

Query  433  TTCCCATCATCACCATCAGGAGGAGGTATTCCCGGTATTCC  473
            ||||| ||  ||   ||||||||||||||||||||| ||||
Sbjct  505  TTCCC-TC--CA---TCAGGAGGAGGTATTCCCGGTCTTCC  539


 Score = 80.5 bits (43),  Expect = 2e-14
 Identities = 70/82 (85%), Gaps = 6/82 (7%)
 Strand=Plus/Plus

Query  396  TATTCGTGGTTCCCCTGGCTTTAGACTTCCGTTTCCATTCCCATCATCACCATCAGGAGG  455
            |||||  ||||| ||||||||||||||||||||||||||||| |||||||| |  |||||
Sbjct  228  TATTCCCGGTTCTCCTGGCTTTAGACTTCCGTTTCCATTCCCGTCATCACC-T--GGAGG  284

Query  456  AGGTATTCCCGGTATTCCTGGT  477
               || |||||||||||| |||
Sbjct  285  ---TAATCCCGGTATTCCCGGT  303



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32200088227


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5