BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg903082
Length=612
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02800.1 | Symbols: | Tyrosine phosphatase family protein |... 976 0.0
> AT3G02800.1 | Symbols: | Tyrosine phosphatase family protein
| chr3:606471-607886 REVERSE LENGTH=961
Length=961
Score = 976 bits (528), Expect = 0.0
Identities = 586/614 (95%), Gaps = 4/614 (1%)
Strand=Plus/Plus
Query 1 ATGTGTTTGATTATGGAAACGGACGATCACGAA-GCTG-TCGTTTTAGCGCCGCCGTCGA 58
||||||||||||||||||||||| |||||| || | || | |||||||||||||||||||
Sbjct 183 ATGTGTTTGATTATGGAAACGGATGATCAC-AACGGTGAT-GTTTTAGCGCCGCCGTCGA 240
Query 59 ATTTCTCGATGGTTGAAGATGGAATTTACCGATCTGGGTTTCCTCGACCTGAGAATTTCA 118
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 241 ATTTCTCGATGGTTGAAGATGGAATTTATCGATCTGGGTTTCCTCGACCTGAGAATTTCA 300
Query 119 GTTTCCTCAAAACCCTAAATCTTCGTGCCATCATTTATCTGTGCCCTGAACCATACCCAG 178
||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 301 GTTTCCTTAAAACCCTAAATCTTCGTTCCATCATTTATCTGTGTCCTGAACCATACCCAG 360
Query 179 AGGAGAATCTCCAGTTTCTTGAGGCTAACAACATTAAGCTTTACCAATTTGGAATCGAAG 238
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGGAGAATCTCAAGTTTCTTGAGGCTAACAACATTAAGCTTTACCAATTTGGAATCGAAG 420
Query 239 GCAAAACGGATCCTCCAACTCTTATGCCAAAAGATACAGTTTTGGATGCTCTCAGAGTCT 298
||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
Sbjct 421 GCAAAACGGATCCTCCAACTCCTATGCCAAAAGATACAGTTTTGGATGCTCTCAAAGTTT 480
Query 299 TAGTTGATGTAAGAAACCATCCAATTCTCATACATTGCAAACGCGGAAAGCATAGGACAG 358
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 481 TAGTTGATGTGAGAAACCATCCAATTCTCATACATTGCAAACGCGGGAAGCATAGGACAG 540
Query 359 GTTGTCTAGTGGGATGCTTAAGAAAGGTTCAGAGCTGGTGCTTATCATCGGTGCTCGAGG 418
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 541 GTTGTCTAGTGGGATGCTTAAGAAAAGTTCAGAGCTGGTGTTTATCATCGGTGCTCGAGG 600
Query 419 AATACCAGAAGAACGCGGGTTTAAAGTGGAGACAAAGGGACTTGAAGTTTATAGAGACAT 478
| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||
Sbjct 601 AGTACCAGAAGAACGCGGGTTTAAAATGGAGACAAAGGGACTTGAATTTTATAGAGGCAT 660
Query 479 TTGATATAGTGAGCTTGAGACAGTGTCTCTTGAGCATCATGTATCAGTATCACGGTTATG 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TTGATATAGTGAGCTTGAGACAGTGTCTCTTGAGCATCATGTATCAGTATCACGGTTATG 720
Query 539 GCTTCAAGAGGAGAAGGTTGGCGTATGAAGACGAAAATGTCCAGACACCAAAACCGCTGG 598
|||||||||||||||||||||| |||||||| || |||||| ||||||||||||||| ||
Sbjct 721 GCTTCAAGAGGAGAAGGTTGGCATATGAAGAAGAGAATGTCAAGACACCAAAACCGCAGG 780
Query 599 CTGCTAAAGTTTAA 612
|||||| |||||||
Sbjct 781 CTGCTAGAGTTTAA 794
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29487444289
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5