BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg903095

Length=393
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G16650.1 | Symbols:  | Chaperone DnaJ-domain superfamily pro...   387    6e-107


> AT5G16650.1 | Symbols:  | Chaperone DnaJ-domain superfamily protein 
| chr5:5463177-5465331 REVERSE LENGTH=912
Length=912

 Score =  387 bits (209),  Expect = 6e-107
 Identities = 312/361 (86%), Gaps = 9/361 (2%)
 Strand=Plus/Plus

Query  15   TCCTCCC-AAGGATTACTATAAGATCCTAGAAGTTGATTATGATGCAACTGAAGAGA-TG  72
            ||| ||| ||||||||||||||||| |||||||||||||| || |||||||| || | ||
Sbjct  277  TCC-CCCTAAGGATTACTATAAGATTCTAGAAGTTGATTACGACGCAACTGAGGA-ATTG  334

Query  73   ATCAAAGTGAGCTATCGGAAGCTTGCATTGAAGTGGCATCCTGATAAGCATAATGGTGAT  132
            |||| | | |  |||||||||||||||||||||||||||||||||||||| || || |||
Sbjct  335  ATCAGACTCAATTATCGGAAGCTTGCATTGAAGTGGCATCCTGATAAGCACAAAGGCGAT  394

Query  133  ACTGTGGCTACTTCAAAATTTCAAGAGATAAACGAAGCTTATAATGTGCTAATGGACCCT  192
            | ||  |||||   ||||||||||||||| || ||||||||||||||||| |||||||||
Sbjct  395  AGTGCAGCTACAGAAAAATTTCAAGAGATTAATGAAGCTTATAATGTGCTGATGGACCCT  454

Query  193  GCTTTACGTTTTGAGTATGATTTCACCGGTATTTACGAGATCCACAAATACACTTTGCGG  252
            |||  ||||||||||||||||||||| ||||| || |||||||||||||||||||| |||
Sbjct  455  GCTAAACGTTTTGAGTATGATTTCACTGGTATATATGAGATCCACAAATACACTTTACGG  514

Query  253  GAATATCTGGCTAGATTTAAGGGAATGATACTCACTTGCAATGGACTTGGCATCAGTCAC  312
            |||||||| || |||||||||||||||||||||||||||||||| || || ||||| || 
Sbjct  515  GAATATCTCGCCAGATTTAAGGGAATGATACTCACTTGCAATGGGCTCGGTATCAGCCAA  574

Query  313  TCCTCATCACCATGGACACAACAATTGG-TG-GAAGGCAATAACACTACAGATGAGCAAG  370
            |||||||||||||||||||| ||||||| || ||   | | ||||  ||||| |||||||
Sbjct  575  TCCTCATCACCATGGACACATCAATTGGCTGAGACCACCA-AACA--ACAGACGAGCAAG  631

Query  371  G  371
            |
Sbjct  632  G  632



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18548799381


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5