BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg903132
Length=1446
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03200.1 | Symbols: anac045, NAC045 | NAC domain containing ... 2217 0.0
AT5G17260.1 | Symbols: anac086, NAC086 | NAC domain containing ... 73.1 7e-12
> AT3G03200.1 | Symbols: anac045, NAC045 | NAC domain containing
protein 45 | chr3:736141-738527 REVERSE LENGTH=1440
Length=1440
Score = 2217 bits (1200), Expect = 0.0
Identities = 1367/1448 (94%), Gaps = 10/1448 (1%)
Strand=Plus/Plus
Query 1 ATGGCTCCTGTCTCGTTACCTCCAGGTTTCAGATTCCATCCAACGGACGAGGAACTAATT 60
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 1 ATGGCTCCTGTCTCGTTACCTCCAGGTTTCCGATTCCATCCAACAGACGAGGAACTAATT 60
Query 61 ACTTACTATCTAAAAAGAAAGATCAACGGTCTAGAAATCGAACTTGAAGTTATCGCTGAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACTTACTATCTAAAAAGAAAGATCAACGGTCTAGAAATCGAACTTGAAGTTATCGCTGAA 120
Query 121 GTTGATCTTTACAAGTGTGAGCCATGGGACTTGCCAGGGAAGTCCTTGCTTCCGAGCAAA 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 GTTGATCTTTACAAGTGTGAGCCATGGGACTTACCAGGGAAGTCCTTGCTTCCGAGCAAA 180
Query 181 GACCAAGAATGGTACTTCTTCAGCCCACGGGACCGGAAGTATCCCAACGGTTCAAGGACG 240
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 181 GACCAAGAATGGTACTTCTTCAGCCCACGAGACCGGAAGTATCCCAACGGCTCAAGGACA 240
Query 241 AACCGAGCAACCAAAGGCGGTTATTGGAAGGCTACGGGTAAAGACCGCCGAGTGAGTTGG 300
||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 241 AACCGGGCAACTAAAGGCGGTTATTGGAAGGCTACAGGTAAAGACCGCCGAGTTAGTTGG 300
Query 301 AGAGACCGAGCCATTGGAACCAAGAAGACATTGGTTTACTACCGTGGGCGCGCACCACAC 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 301 AGAGACCGAGCCATAGGAACCAAGAAGACATTGGTTTACTACCGTGGGCGCGCGCCACAT 360
Query 361 GGCATAAGAACTGGTTGGGTCATGCACGAATATCGACTTGATGAAACAGAATGTGAGCCT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GGCATAAGAACTGGTTGGGTCATGCACGAATATCGACTTGATGAAACAGAATGTGAGCCT 420
Query 421 TCTGCTTACGGCATGCAGGACGCATATGCACTTTGTCGTGTGTTCAAAAAGATTGTTATT 480
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TCTGCATACGGCATGCAGGACGCATATGCACTTTGTCGTGTGTTCAAAAAGATTGTTATT 480
Query 481 GAAGCTAAGCCAAGAGATCAGCACCGGTCATATGTACACGCGATGTCCAATGTGATTGGT 540
|||||||||||||||||||| || ||||||||||| ||||||||||| ||||||| ||||
Sbjct 481 GAAGCTAAGCCAAGAGATCAACATCGGTCATATGTCCACGCGATGTCGAATGTGAGTGGT 540
Query 541 AATTGCTCATCGCGTTTTGACGCTTGTTCGGATCTCGAAATCAGTTCAACTACTCATCAA 600
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 541 AATTGCTCATCGAGTTTTGACACTTGTTCGGATCTCGAAATCAGTTCAACTACTCATCAA 600
Query 601 GTTCAAAACACATTCCAACCGCGATTTGGCAACGAGCGTTTTAACTCTAACGCAATCAGC 660
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 601 GTTCAAAACACATTCCAACCGCGATTTGGCAACGAGCGATTTAACTCCAACGCAATCAGC 660
Query 661 AACGAGGACTGGTCACAATACTACGGTTCTTCTTATAGACCGTTCCCTACTCCATATAAG 720
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AACGAGGATTGGTCACAATACTACGGTTCTTCTTATAGACCGTTCCCTACTCCATATAAG 720
Query 721 GTTAATACAGAGATCGAATGTTCAATGTTACAACACAATATATCTCTACCACCGTTGCGT 780
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 721 GTTAACACAGAGATCGAATGTTCAATGTTACAACACAATATATATCTACCACCGTTGCGT 780
Query 781 GTAGAGAACTCTTCGGTTAGTGATTGCGATTTCTTCAAGAGTATGACTCACAACAACGAT 840
|||||||||||| || ||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 781 GTAGAGAACTCTGCGTTTAGTGATTCCGATTTCTTCACGAGTATGACTCACAACAACGAC 840
Query 841 AATGGCGTTTTTGATGACTTTACTTTCGCTGCAAGTAACTCCAACCACTATAATAGCGTT 900
|||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 841 CATGGCGTTTTCGATGACTTTACTTTTGCTGCAAGTAACTCCAACCACAATAATAGCGTT 900
Query 901 GGTGATCAAGTGATCCACGTTGGCAATTATGATGAACAACAATTAATAACGTCAAATCAT 960
||||||||||||||||||||||||||||||||||||||| |||||||| || || | |
Sbjct 901 GGTGATCAAGTGATCCACGTTGGCAATTATGATGAACAA---TTAATAACATCTAACCGT 957
Query 961 CATATGAACCAGGCCGGTTATATAGAAGATCAGAAGATCATATCGAGTTTTGATGATACA 1020
|||||||||||| | ||||||||| |||| |||||||||| ||||||||| ||| ||||
Sbjct 958 CATATGAACCAGACTGGTTATATAAAAGAGCAGAAGATCAGATCGAGTTTGGATAATACT 1017
Query 1021 GACCAAGATCTTGGATTTCATGGGAACAATACCAATGACAACATAGATATCGATGATTTT 1080
||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1018 GACGAAGATCCAGGATTTCATGGTAACAATACCAATGACAACATAGATATCGATGATTTT 1077
Query 1081 TTCTCGTTTGATACGTATAACGAGGAAAACGTAAA-CAGGATAGAAGACAATGAAGACGT 1139
|||||||||||| ||||||||||| ||||| || || |||||||| |||||||||||
Sbjct 1078 CTCTCGTTTGATATATATAACGAGGACAACGTGAATCAA-ATAGAAGATAATGAAGACGT 1136
Query 1140 AAATAAAAATGAAACCCTTGATTCATCGGAATTCGATGTGGTTGAAGAGGAAACTAGATT 1199
|||| ||||||||||||||||||||||| |||||| ||||||||||| |||||||||||
Sbjct 1137 GAATACAAATGAAACCCTTGATTCATCGGGATTCGAGGTGGTTGAAGAAGAAACTAGATT 1196
Query 1200 TAACAACCAAATGCTCATCTCGACATCTCAAACAACGAAGATTCTATATCACCAAGTCGT 1259
|||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||
Sbjct 1197 TAACAACCAAATGCTCATCTCGACATATCAAACGACAAAGATTCTATATCACCAAGTCGT 1256
Query 1260 ACCTTCTCACACGGTT-AAAGTTCACGTCAATCCTATTAATCACAATGTGGAAGAGAGAA 1318
||||| ||||||| || |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1257 ACCTTGTCACACG-TTGAAAGTTCACGTCAATCCTATTAGTCACAATGTGGAAGAGAGAA 1315
Query 1319 CATTGTTCATTGAAGAGGACAAAGATTCTTGGTTACAAAGAGCTGAGAAGATCACGAAGA 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 CATTGTTCATTGAAGAGGACAAAGATTCTTGGTTACAAAGAGCTGAGAAGATCACGAAGA 1375
Query 1379 CTAAACTAACACTTTTTAGTTTAGTGGCTCAGCAATACTACAAATGTCGTCTTGCCAttt 1438
| ||||||||||||||||||||| |||||||||||||||||||||||| | | || ||||
Sbjct 1376 CAAAACTAACACTTTTTAGTTTAATGGCTCAGCAATACTACAAATGTC-T-T-GCTATTT 1432
Query 1439 ttttCTGA 1446
||||||||
Sbjct 1433 TTTTCTGA 1440
> AT5G17260.1 | Symbols: anac086, NAC086 | NAC domain containing
protein 86 | chr5:5675323-5677912 REVERSE LENGTH=1431
Length=1431
Score = 73.1 bits (39), Expect = 7e-12
Identities = 197/267 (74%), Gaps = 36/267 (13%)
Strand=Plus/Plus
Query 682 TACGGTTCTTCTTATAGACCGTTCCCT-ACTCCAT-ATAAGGTTAATACAG-AGATCG-A 737
||||| ||| ||||| |||| | ||| |||| || | ||||| ||||||| || | | |
Sbjct 715 TACGGATCTCCTTATGGACC-ATACCTCACTCAATCA-AAGGTGAATACAGAAG-T-GCA 770
Query 738 ATGTTCA-ATGTTACAACA-CAATATATC-TCTACCACCGTTGCGTGTAGAGAACTCTTC 794
||| | | ||||| ||||| ||| || || | | ||||| ||||| ||||| ||||| |
Sbjct 771 ATG-TGAGATGTTTCAACACCAA-ATGTCAT-TGCCACCATTGCGAGTAGAAAACTC-GC 826
Query 795 -GG-T-TAGTGATTGCGATTTCTTCAAGAGTA-TGAC-TCACAACAACGAT--AA-TGGC 846
|| | | | ||||||||| |||||| | | || ||| |||| | | || |||
Sbjct 827 AGGCTCAAACCA--GCGATTTCTCCAAGAG-ACT-ACATCAAAACAGTGGTCAAAGTGG- 881
Query 847 GTTTTTGATGACTTTACTTTCGCTGCAAGTAACTCCAACCA---CTATAATAGC---GTT 900
| || || |||||||||||||||||||||||||||||||| ||| || ||| |||
Sbjct 882 G--TTCGACGACTTTACTTTCGCTGCAAGTAACTCCAACCAATTCTACAACAGCAACGTT 939
Query 901 GGTGATCAAGTGATCCACGTTGGCAAT 927
| |||||| |||| ||| |||| |||
Sbjct 940 GATGATCATTTGATACACATTGGAAAT 966
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71284773900
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5