BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg903167
Length=948
Score E
Sequences producing significant alignments: (Bits) Value
AT4G04220.1 | Symbols: AtRLP46, RLP46 | receptor like protein 4... 398 6e-110
AT4G04221.1 | Symbols: | other RNA | chr4:2035159-2036370 REVE... 368 5e-101
AT3G03370.2 | Symbols: | FUNCTIONS IN: molecular_function unkn... 237 1e-61
> AT4G04220.1 | Symbols: AtRLP46, RLP46 | receptor like protein
46 | chr4:2033427-2035946 FORWARD LENGTH=2436
Length=2436
Score = 398 bits (215), Expect = 6e-110
Identities = 332/387 (86%), Gaps = 14/387 (4%)
Strand=Plus/Plus
Query 559 AGAACTCTCCTAGAACAAGCTATTCGGAGAAGTTCCATA-TTCTTTAGGCAATCTCAAAA 617
||| |||||| ||||||||||| ||||||| | ||| | ||||||||||||||||||||
Sbjct 1941 AGATCTCTCCAAGAACAAGCTACACGGAGAAATCCCA-ACTTCTTTAGGCAATCTCAAAA 1999
Query 618 G-CTGAAAGCTTTT-AACCTCT-CATACAACGACATCTCTGGATTGATCCCACAAAGTTT 674
| || |||| |||| || || | || ||||||| |||||||||||||||||||||||||
Sbjct 2000 GCCT-AAAGGTTTTAAATCTTTCCA-ACAACGAGTTCTCTGGATTGATCCCACAAAGTTT 2057
Query 675 TGGAAATCTTGAGAAGGTAGAGATCTTAGACCTTTCACACAACAACCTCTCAGGCGAAAT 734
|||| |||||||||||||||||| ||||||||||||||||||||||||| | ||||||||
Sbjct 2058 TGGAGATCTTGAGAAGGTAGAGAGCTTAGACCTTTCACACAACAACCTCACTGGCGAAAT 2117
Query 735 CCCGCAGACACTT-TCCAAGCTCAGCAAGCTGAATGTATCGGAGTTGAAAAACAACAAAC 793
|||| | || || |||||||| ||| |||||||| || ||| ||| |||||||| |
Sbjct 2118 CCCGAAAACG-TTATCCAAGCTAAGCGAGCTGAATACATTGGATTTGCGTAACAACAAGC 2176
Query 794 TTACAGGTAGAATCCCTGAGAGTCCTCAGCTAGACAGATTGAACGATCCAAACACTTACG 853
||| ||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||
Sbjct 2177 TTAAAGGTAGAATCCCTGAAAGTCCTCAGCTAGACAGATTGAACAATCCAAACATTTACG 2236
Query 854 CGAACAACAACA-AACTATGTGGAATGCAAATCCAAGAACCATGCT--C-TACACAGACC 909
||||||||| | || | ||||||||||||||||||| |||||||| | ||||||||||
Sbjct 2237 CGAACAACAGCGGAA-TCTGTGGAATGCAAATCCAAGTACCATGCTTTCCTACACAGACC 2295
Query 910 AAGCAGCCAGAGGAAGATAAAGAGGAA 936
|||||||||| || || ||||| |||
Sbjct 2296 AAGCAGCCAGCTGAGGAAAAAGAAGAA 2322
Score = 246 bits (133), Expect = 2e-64
Identities = 244/297 (82%), Gaps = 10/297 (3%)
Strand=Plus/Plus
Query 267 AGAAGGAAAAATTCCGGATTGGCTCAAGAATCAAACAGCTCTTCTTTTCCTGGATCTGAG 326
|||||| || ||||||||||||||||||||||||||||||||| ||| | ||||| ||||
Sbjct 1011 AGAAGGGAATATTCCGGATTGGCTCAAGAATCAAACAGCTCTTGTTTACTTGGATTTGAG 1070
Query 327 CATGAACAAACTTGAAGGAAGTTTTCCCCAA-TGGTTGGCTGATCTAAAAATC-GAAACC 384
||| |||| ||| |||||||| || ||| || ||| | |||||||| |||||| |||||
Sbjct 1071 CATTAACAGACTCGAAGGAAGATT-CCCAAAATGGCTAGCTGATCTGAAAATCAGAAAC- 1128
Query 385 ATAATTTTTTCAGACTACAGACTCTCAGGTTCATTGCCTCCTAGTTTGTTTCAGTC-TAT 443
|||| ||| |||||| |||||||| |||| ||| ||||||| | |||||||||| | |
Sbjct 1129 ATAACTTTGTCAGACAACAGACTCACAGGCTCACTGCCTCCAAATTTGTTTCAG-CGTCC 1187
Query 444 AAGCTTAT-CGGTTCTTGCGCTATCAAGAAACAACTTCTCTGGTCAGATTCCTGATATG- 501
||||||| | | |||| |||||||| |||||||| ||||||||||| ||||||| |
Sbjct 1188 GAGCTTATACTAT-CTTGTACTATCAAGGAACAACTTTTCTGGTCAGATCCCTGATACGA 1246
Query 502 TTAGGAGAAACATGGGTCATGACATTGATGCTGACTGAAAACAACTTCTCAGGATCA 558
|| || ||| || ||||||| | | ||| || |||||||||||||||||||||||
Sbjct 1247 TT-GGCGAATCACAGGTCATGGTACTCATGTTGTCTGAAAACAACTTCTCAGGATCA 1302
> AT4G04221.1 | Symbols: | other RNA | chr4:2035159-2036370 REVERSE
LENGTH=613
Length=613
Score = 368 bits (199), Expect = 5e-101
Identities = 299/346 (86%), Gaps = 11/346 (3%)
Strand=Plus/Minus
Query 559 AGAACTCTCCTAGAACAAGCTATTCGGAGAAGTTCCATA-TTCTTTAGGCAATCTCAAAA 617
||| |||||| ||||||||||| ||||||| | ||| | ||||||||||||||||||||
Sbjct 436 AGATCTCTCCAAGAACAAGCTACACGGAGAAATCCCA-ACTTCTTTAGGCAATCTCAAAA 378
Query 618 G-CTGAAAGCTTTT-AACCTCT-CATACAACGACATCTCTGGATTGATCCCACAAAGTTT 674
| || |||| |||| || || | || ||||||| |||||||||||||||||||||||||
Sbjct 377 GCCT-AAAGGTTTTAAATCTTTCCA-ACAACGAGTTCTCTGGATTGATCCCACAAAGTTT 320
Query 675 TGGAAATCTTGAGAAGGTAGAGATCTTAGACCTTTCACACAACAACCTCTCAGGCGAAAT 734
|||| |||||||||||||||||| ||||||||||||||||||||||||| | ||||||||
Sbjct 319 TGGAGATCTTGAGAAGGTAGAGAGCTTAGACCTTTCACACAACAACCTCACTGGCGAAAT 260
Query 735 CCCGCAGACACTT-TCCAAGCTCAGCAAGCTGAATGTATCGGAGTTGAAAAACAACAAAC 793
|||| | || || |||||||| ||| |||||||| || ||| ||| |||||||| |
Sbjct 259 CCCGAAAACG-TTATCCAAGCTAAGCGAGCTGAATACATTGGATTTGCGTAACAACAAGC 201
Query 794 TTACAGGTAGAATCCCTGAGAGTCCTCAGCTAGACAGATTGAACGATCCAAACACTTACG 853
||| ||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||
Sbjct 200 TTAAAGGTAGAATCCCTGAAAGTCCTCAGCTAGACAGATTGAACAATCCAAACATTTACG 141
Query 854 CGAACAACAACA-AACTATGTGGAATGCAAATCCAAGAACCATGCT 898
||||||||| | || | ||||||||||||||||||| ||||||||
Sbjct 140 CGAACAACAGCGGAA-TCTGTGGAATGCAAATCCAAGTACCATGCT 96
> AT3G03370.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 13 plant structures;
EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana
protein match is: DegP protease 7 (TAIR:AT3G03380.1). |
chr3:797254-799148 REVERSE LENGTH=1171
Length=1171
Score = 237 bits (128), Expect = 1e-61
Identities = 171/190 (90%), Gaps = 10/190 (5%)
Strand=Plus/Minus
Query 634 CTCTCATACAACGACATCTCTGGATTGATCCCACAAAGTTTTGGAAATCTTGAGAAGGTA 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 CTCTCATACAACGACATCTCTGGATTGATCCCACAAAGTTTTGGAAATCTTGAGAAGGTA 771
Query 694 GAGATCTTAGACCTTTCACACAACAACCTCTCAGGCGAAATCCCGCAGACACTTTCCAAG 753
|| | | |||||||||| ||||||||||||||||||||||||| ||| ||||||
Sbjct 770 GA---C-----C-TTTCACACAATAACCTCTCAGGCGAAATCCCGCAGAAACTATCCAAG 720
Query 754 CTCAGCAAGCTGAATGTATCGGAGTTGAAAAACAACAAACTTACAGGTAGAATCCCTGAG 813
||||| |||||||||||| |||||||| ||||||||||||| ||||||||||| ||||
Sbjct 719 CTCAGTGAGCTGAATGTAT-GGAGTTGAGCAACAACAAACTTATAGGTAGAATCCATGAG 661
Query 814 AGTCCTCAGC 823
||||||||||
Sbjct 660 AGTCCTCAGC 651
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46366117681
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5