BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg903170

Length=882
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G03305.1 | Symbols:  | Calcineurin-like metallo-phosphoester...   523    1e-147
  AT3G03300.1 | Symbols: DCL2, ATDCL2 | dicer-like 2 | chr3:76792...   305    4e-82 


> AT3G03305.1 | Symbols:  | Calcineurin-like metallo-phosphoesterase 
superfamily protein | chr3:775368-778396 REVERSE LENGTH=2493
Length=2493

 Score =  523 bits (283),  Expect = 1e-147
 Identities = 332/356 (93%), Gaps = 2/356 (1%)
 Strand=Plus/Plus

Query  284   TTCCTTGTCATGGGCCGCCAATAGGCGACATTATATATTACCCGATTCTTTGGCTTCCTC  343
             |||| |||||||||| |||| | |||| || | ||||||||||||||||||||| | |||
Sbjct  1623  TTCCGTGTCATGGGCTGCCAGTGGGCGGCA-T-TATATTACCCGATTCTTTGGCCTGCTC  1680

Query  344   TATATAGtttttttCTCGTTTTTCTTATCCCCAAATGCATCATCACCGTTTTCAAGAAGC  403
             |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  1681  TATATAGTTTGTTTCTCGTTTTTCTTATCCCCAAATGCATCATCATCGTTTTCAAGAAGC  1740

Query  404   AGTACACTCTCAAGAAGTTCATTGCCAAGAAAAGACCAATCACACTTGTACTGTGGATTC  463
             |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct  1741  AGTACACTCTCAAGAAGTTCATTGCCAAGAAAGGACCTATCACACTTGTACTGTGGATTC  1800

Query  464   TCCAATACCTCTGCAGAATGCCTGTGGTTTGGTTCGGTTACATGGCATACTTGTTCTATC  523
             ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1801  TCCAAGACCTCTGCAGAATGCCTGTGGTTTGGTTCGGTTACATGGCATACTTGTTCTATC  1860

Query  524   TCATATTCTTTCCTTGGTTCTCGGGTGAAGTGTATACTGATTCCGGAAACAGAACATACA  583
             |||||||||||||||||||||| |||||||||| | ||||||| ||| ||||| ||||||
Sbjct  1861  TCATATTCTTTCCTTGGTTCTCCGGTGAAGTGTTTGCTGATTCTGGAGACAGAGCATACA  1920

Query  584   TGACTATTATTGGCTGGGTGGTGACAAGCTCAGGCGCAGATAGGCAACATGAATAC  639
             |||||||||| || ||||||||||| |||||||||||||||||| |||||||||||
Sbjct  1921  TGACTATTATGGGATGGGTGGTGACGAGCTCAGGCGCAGATAGGAAACATGAATAC  1976


 Score =  372 bits (201),  Expect = 4e-102
 Identities = 226/238 (95%), Gaps = 1/238 (0%)
 Strand=Plus/Plus

Query  6    AAAAGCAAAGACAATGTTAACAATGAAGCTAAATGAAGATGAGTGGTTAGAATACGAGAA  65
            |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| 
Sbjct  441  AAAAGCAAAGAC-ATGTTAACAATGAAGTTAAATGAAGATGAGTGGTTAGAATACGAGAG  499

Query  66   TGTGATGCAAGATGTTGTGAAAACAAGTGGGCTTAATAAGAGCATATTTTATGATCTTAG  125
            ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct  500  TGTGATGCAAGATGTTGTGAAGAGAAGTGGGCTTAATAAGAGCATATTTTATGATCTTAG  559

Query  126  AGGTAATCATGACATTTTTGGTGTTCCGGCTGTTGGTTCATCTGTTGATTTCTTCCCAAA  185
             ||||| |||||||  |||||||||||| |||||||||||||||||||||||||| ||||
Sbjct  560  GGGTAACCATGACAACTTTGGTGTTCCGTCTGTTGGTTCATCTGTTGATTTCTTCTCAAA  619

Query  186  GTATAGCATCAATGGACAGATGGAAAGGAAAGGAAATGTTAACACCATAACTGTTGAG  243
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  620  GTATAGCATCAATGGACAGATGGGAAGGAAAGGAAATGTTAACACCATAACTGTTGAG  677


 Score =  145 bits (78),  Expect = 9e-34
 Identities = 108/121 (89%), Gaps = 8/121 (7%)
 Strand=Plus/Plus

Query  640   TCTTGGTTGTATGTTGTCTGGTTGCTGAGAGAGAGATCTACAAAG---AGA---G-A-TG  691
             |||||||||| ||||||||||||||||||||||| ||||||||||   | |   | | ||
Sbjct  2041  TCTTGGTTGTGTGTTGTCTGGTTGCTGAGAGAGAAATCTACAAAGATCACATTCGAACTG  2100

Query  692   TCTCTGGTATGAATGAGGATGACCATGACCGGGGAAGGAAGAAGAGATCACAACGCCGCT  751
             ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2101  TCTCTGGTAAGAAAGAGGATGACCATGACCGGGGAAGGAAGAAGAGATCACAACGCCGCT  2160

Query  752   C  752
             |
Sbjct  2161  C  2161


> AT3G03300.1 | Symbols: DCL2, ATDCL2 | dicer-like 2 | chr3:767926-776214 
REVERSE LENGTH=4824
Length=4824

 Score =  305 bits (165),  Expect = 4e-82
 Identities = 187/198 (94%), Gaps = 0/198 (0%)
 Strand=Plus/Plus

Query  442  ATCACACTTGTACTGTGGATTCTCCAATACCTCTGCAGAATGCCTGTGGTTTGGTTCGGT  501
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  2    ATCACACTTGTACTGTGGATTCTCCAAGACCTCTGCAGAATGCCTGTGGTTTGGTTCGGT  61

Query  502  TACATGGCATACTTGTTCTATCTCATATTCTTTCCTTGGTTCTCGGGTGAAGTGTATACT  561
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||
Sbjct  62   TACATGGCATACTTGTTCTATCTCATATTCTTTCCTTGGTTCTCCGGTGAAGTGTTTGCT  121

Query  562  GATTCCGGAAACAGAACATACATGACTATTATTGGCTGGGTGGTGACAAGCTCAGGCGCA  621
            ||||| ||| ||||| |||||||||||||||| || ||||||||||| ||||||||||||
Sbjct  122  GATTCTGGAGACAGAGCATACATGACTATTATGGGATGGGTGGTGACGAGCTCAGGCGCA  181

Query  622  GATAGGCAACATGAATAC  639
            |||||| |||||||||||
Sbjct  182  GATAGGAAACATGAATAC  199


 Score =  145 bits (78),  Expect = 9e-34
 Identities = 108/121 (89%), Gaps = 8/121 (7%)
 Strand=Plus/Plus

Query  640  TCTTGGTTGTATGTTGTCTGGTTGCTGAGAGAGAGATCTACAAAG---AGA---G-A-TG  691
            |||||||||| ||||||||||||||||||||||| ||||||||||   | |   | | ||
Sbjct  264  TCTTGGTTGTGTGTTGTCTGGTTGCTGAGAGAGAAATCTACAAAGATCACATTCGAACTG  323

Query  692  TCTCTGGTATGAATGAGGATGACCATGACCGGGGAAGGAAGAAGAGATCACAACGCCGCT  751
            ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  324  TCTCTGGTAAGAAAGAGGATGACCATGACCGGGGAAGGAAGAAGAGATCACAACGCCGCT  383

Query  752  C  752
            |
Sbjct  384  C  384



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 43050663979


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5