BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg903199

Length=453
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G03773.2 | Symbols:  | HSP20-like chaperones superfamily pro...   749    0.0  


> AT3G03773.2 | Symbols:  | HSP20-like chaperones superfamily protein 
| chr3:951628-953840 FORWARD LENGTH=965
Length=965

 Score =  749 bits (405),  Expect = 0.0
 Identities = 437/453 (96%), Gaps = 0/453 (0%)
 Strand=Plus/Plus

Query  1    ATGAGTCGCAATCCGGAGGTTCTTTGGGCTCAGCGTTCTGATAAGGTTTACCTAACTGTC  60
            |||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  163  ATGATTCGTAATCCGGAGGTTCTTTGGGCTCAGCGTTCTGATAAAGTTTACCTAACTGTC  222

Query  61   GCATTACCTGATGCGAAAGACATTTCGGTCAAGTGTGAGCCTCAGGGTCTATTCAGTTTC  120
            || |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct  223  GCCTTACCTGATGCGAAGGACATTTCGGTGAAGTGTGAGCCTCAGGGTCTATTCAGTTTC  282

Query  121  TCTGCTCTTGGTGCTCAAGGCGAGCGCTTTGAATTCAGCTTGGAGTTATATGGGAAGATT  180
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  283  TCTGCTCTTGGTGCCCAAGGCGAGCGCTTTGAATTCAGCTTGGAGTTATATGGGAAGATT  342

Query  181  ATGCCAGAATATCGGAAGAATGTAGGGCTAAGGAACATCATATTTTCAATTCAGAAAGAA  240
            ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  343  ATGACAGAATATCGGAAGAATGTAGGACTAAGGAACATCATATTTTCAATTCAGAAAGAA  402

Query  241  GAGAAAAGCTGGTGGACACGACTGCTGAAATCGGAAGAGAAACCCGCACCTTACATCAAA  300
            |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  403  GAGAGAAGCTGGTGGACACGACTGCTGAAATCGGAAGAGAAACCTGCACCTTACATCAAA  462

Query  301  GTCGACTGGAATAAATGGTGTGATGAGGATGAGGAGGTCAACTCTGAAACGGCCTCTGAT  360
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  463  GTCGACTGGAATAAATGGTGTGATGAGGATGAGGAGGTCAACTCTGAAACAGCCTCTGAT  522

Query  361  GATGAGAGTGCATTCGTTAATGAAGATAGTGAAAGCAGCGATGACGATGGATTGCTCTAT  420
            |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  523  GATGAGAGTGCATTTGTTAATCAAGATAGTGAAAGCAGCGATGACGATGGATTGCTCTAT  582

Query  421  CTTCCTGATCTGGAAAAGGCGAGAAGCAAGTAG  453
            |||||||||||||||||||| |||| |||||||
Sbjct  583  CTTCCTGATCTGGAAAAGGCAAGAAACAAGTAG  615



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21564864321


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5