BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg903223
Length=711
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04020.1 | Symbols: | unknown protein; Has 26 Blast hits to... 1125 0.0
> AT3G04020.1 | Symbols: | unknown protein; Has 26 Blast hits
to 25 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes
- 3 (source: NCBI BLink). | chr3:1040548-1042518 FORWARD
LENGTH=1056
Length=1056
Score = 1125 bits (609), Expect = 0.0
Identities = 677/711 (95%), Gaps = 0/711 (0%)
Strand=Plus/Plus
Query 1 ATGTTTGATGAACGTGGATCCTTTTCTATTGCCCATCCATATCCTGGTCCCCTTGCAGCT 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 205 ATGTTTGATGAACGTGGATCCTTTTCTATTGCCCATCCGTATCCTGGTCCCCTTGCAGCT 264
Query 61 TTGTTCAAGTCAATAGGAAAGCTTCCAGACCGGGTTGCTTTTACTGGTGAGATTGTCCCT 120
|| |||||||| ||||||||||||||||| |||||||||||||||| |||||||| |||
Sbjct 265 TTATTCAAGTCTATAGGAAAGCTTCCAGAAAGGGTTGCTTTTACTGGAGAGATTGTTCCT 324
Query 121 GTTAAAGAGAAAAGGGTTGATGCGGTGAATAAATATGTCGAGGAAGCTATACAATTTGAG 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||
Sbjct 325 GTTAAAGAGAAAAGGGTTGATGCGGTGAAGAAATATGTCGAGGAAGCTATACAGTCAGAG 384
Query 181 ATGAGGGCGATTAGCGAGAGCCCAAATTCTGTTCGTAGTATCTTGAATTCTTCCGATCGG 240
|||| ||||||||||| | |||||||||||| |||||||| |||||||||||||||| |
Sbjct 385 ATGAAAGCGATTAGCGATACCCCAAATTCTGTCCGTAGTATTTTGAATTCTTCCGATCAG 444
Query 241 ATGTATGCCTCCCGGTGTGATAGTCTTAGAGCCCTGATCGATGATGCAAAGGAAAAATAC 300
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 445 ATGTATGCCTCCCGGTGTGACAGTCTTAGAGCCCTGATCAATGATGCAAAGGAAAAATAC 504
Query 301 GTTATCTATAAGTTCGTTCCAAGCTCATGTATGTTTATTGACCCAAATGGCACGAAAGAA 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 505 GTTATCTATAAGTTCGTTCCAAGCTCATGTATGTTTATTGACCCAAATGGTACGAAAGAA 564
Query 361 ATAGACTTGAAGGTTTTGGAACTGTCGAAAGCAGATCCATTAGGGACTTGGTCTACAAAA 420
|||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||
Sbjct 565 ATAGACTTGAAGGTTTTGGAACTGTCAAAACCAGATCCATTAGGGACTTGGTCGACAAAA 624
Query 421 CTTGTGGATGGAATAAATAAGAACGAATCAAGAAGACGGGCTTTGATTCTTTTCTGTTTA 480
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 625 CTTGTGGATGGAATCAATAAGAACGAATCAAGAAGACGAGCTTTGATTCTTTTCTGTTTA 684
Query 481 TACTATCTCGATATAAACGCAAGGGATGCTTATTTGGTATCAGTGGATAAGAAAGGTTTC 540
|| | ||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 685 TATTTTCTTGATATAAACGCAAGGGATGCTTATATGGTATCAGTGGATAGGAAAGGTTTC 744
Query 541 CACTTGTTGGGGAAGGTACCGAGTGAAGAAGAAGCTGGAGATGAGTATCAATGGAGAGAG 600
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 745 CACTTGTTGGGGAAGGTACCGAGTGAACAAGAAGCTGGAGATGAGTATCAGTGGAGAGAG 804
Query 601 TTTAGGTTTGAGTTTGAAGAAGAGGTGAAAGACGTTGAAGCTTTTTGCCACCAACTCGTG 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 805 TTTAGGTTTGAGTTTGAAGAAGAGGTGAAAGACGTTGAAGCTTTTTGCCACCAACTTGTG 864
Query 661 GAAATGGAACAAGAGGTTGTAAGCAAGTTTACTGACCATACCGGTTTGTGA 711
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 865 GAAATGGAACAAGAGGTTGTAAGCAAGTTTACTGACCATACCGGTTTGTGA 915
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34460624842
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5