BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg903256
Length=231
Score E
Sequences producing significant alignments: (Bits) Value
ATCG01130.1 | Symbols: YCF1.2 | Ycf1 protein | chrC:123884-1292... 381 1e-105
> ATCG01130.1 | Symbols: YCF1.2 | Ycf1 protein | chrC:123884-129244
REVERSE LENGTH=5361
Length=5361
Score = 381 bits (206), Expect = 1e-105
Identities = 224/232 (97%), Gaps = 4/232 (2%)
Strand=Plus/Plus
Query 1 TTGATAGaaaaaaagacaatcagaaatcaaatagaagctatttcaaaagaaaaacaaaaC 60
||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 3050 TTGATAG-AAAAAAGACAATCAGAAATCAAATAGAAGAAATTTCAAAAGAAAAACAAAAC 3108
Query 61 TTAACTAATAGTTGTACCAAACTGCGTTATGATTCTAAAATAATTGAGTCATCaaaaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3109 TTAACTAATAGTTGTACCAAACTGCGTTATGATTCTAAAATAATTGAGTCATCAAAAAAA 3168
Query 121 aTTTGGCAGACATTCAAAAGAAAAAATACCCGATTAATTCGTAAATCt-ttttttttttC 179
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 3169 ATTTGGCAGACATTCAAAAGAAAAAATACCCGATTAATTCGTAAATCCATTTTTTTTTT- 3227
Query 180 TAAAATTTTGCATCGAACAACTGTCTATAGCTATTTTTCTAGGTATCATTAA 231
|||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 3228 TAAA-TTTTGCATCGAACAAATGTCTATAGCTATTTTTCTAGGTATCATTAA 3278
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10405424043
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5