BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg903257

Length=336
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATCG01130.1 | Symbols: YCF1.2 | Ycf1 protein | chrC:123884-1292...   555    1e-157


> ATCG01130.1 | Symbols: YCF1.2 | Ycf1 protein | chrC:123884-129244 
REVERSE LENGTH=5361
Length=5361

 Score =  555 bits (300),  Expect = 1e-157
 Identities = 325/337 (96%), Gaps = 1/337 (0%)
 Strand=Plus/Plus

Query  1     CAAAAATTTTTTGAGGCCGACTCATTATTAAATCCAAAACATAATGTaaaaaaaGATTCT  60
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  3820  CAAAAATTTTTTGAGGCCGACTCATTATTAAATCCAAAACATAATGTAAAAAAAGATTCT  3879

Query  61    ATATATAATCTTTTTTGCTATAACTCTATTCATTCTACAGAAAttttttttGACATGTCT  120
             ||||||||||||||||||||||| |||||||||||||||||||    |||||||||||||
Sbjct  3880  ATATATAATCTTTTTTGCTATAAATCTATTCATTCTACAGAAAAAAATTTTGACATGTCT  3939

Query  121   ATAGGCATTGCCCTAGATAATTGTTTAGTCTCTTCTTTTCTAGAAAAATATAATATTCGG  180
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  3940  ATAGGCATTGCCCTAGATAATTGTTTAGTCTCTTCTTTTCTAGAAAAATATAATATTCGG  3999

Query  181   GGTATGGGGGAAATTCGGCATAGAAAATATTTGGATTGGAGAATTCTTAACTTTTGGTTT  240
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  4000  GGTATGGGGGAAATTCGGCATAGAAAATATTTGGATTGGAGAATTCTTAACTTTTGGTTT  4059

Query  241   ACaaaaaaaGTAAATATTGAGCCCTGGGTTGATACCAAGAGTaaaaaaaa-TACATTAAT  299
             ||||||||||||| ||||||||| ||||||||||| |||||||||||||| || ||||||
Sbjct  4060  ACAAAAAAAGTAACTATTGAGCCTTGGGTTGATACTAAGAGTAAAAAAAAATATATTAAT  4119

Query  300   ACTAAAGTTCAGAATTATCAAAGAATTGATCAAATAA  336
             |||||||||||||||||||||| ||||||| ||||||
Sbjct  4120  ACTAAAGTTCAGAATTATCAAAAAATTGATAAAATAA  4156



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15683537688


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5