BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg903265

Length=294
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G44280.1 | Symbols:  | Major facilitator superfamily protein...   444    2e-124
  AT3G04485.1 | Symbols:  | other RNA | chr3:1198114-1200104 FORW...   189    1e-47 


> AT2G44280.1 | Symbols:  | Major facilitator superfamily protein 
| chr2:18301350-18304284 REVERSE LENGTH=1959
Length=1959

 Score =  444 bits (240),  Expect = 2e-124
 Identities = 278/296 (94%), Gaps = 3/296 (1%)
 Strand=Plus/Plus

Query  1     TATGCAGAGTGTGTTGATTGGTTCGGAACT-GGTGGATGTGCTTTCGTTTGTGGGCCATT  59
             |||||||||||| |||||||||||| |||| || ||||||||||||||||||||| ||||
Sbjct  1452  TATGCAGAGTGTCTTGATTGGTTCGAAACTCGGGGGATGTGCTTTCGTTTGTGGGTCATT  1511

Query  60    AAGCTTCTTAGACAAAATGTTATGTGTGCTTGCTTTATATGTTCTTCAGTTACATCAAAG  119
             |||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||| |
Sbjct  1512  AAGCTTCTTAGACAAAATGTCATGTGGGCTTGCTTTATATGTTCTTCAGTCACATCAAGG  1571

Query  120   CACTTCACCAAAGGTCGATGTAAACATCAAACG-ATATTTTTACTTCTCGGTGACAAGAT  178
             ||||||||||||||| || |||||||||||| | ||||||||||||||||||||||||||
Sbjct  1572  CACTTCACCAAAGGTTGACGTAAACATCAAA-GAATATTTTTACTTCTCGGTGACAAGAT  1630

Query  179   ATGGGTTAGGACTTGTTCCAGCTCTATGCTCGCTTGTTGGAGTTGTTGTAACATATTTTA  238
             ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  1631  ATGGGTTAGGACTTGTTCCAGCTGTATGCTCGCTTGTTGGAGTTGTTGTAACATATTTTA  1690

Query  239   TGGAACTCAATAGCACAATTCTAAAGCTTCTGTGTCAATCGCTACTACTAGAATGA  294
             |||||||| ||||||| |||||||||| |||||||||| |||||||||||||||||
Sbjct  1691  TGGAACTCGATAGCACGATTCTAAAGCCTCTGTGTCAACCGCTACTACTAGAATGA  1746


> AT3G04485.1 | Symbols:  | other RNA | chr3:1198114-1200104 FORWARD 
LENGTH=878
Length=878

 Score =  189 bits (102),  Expect = 1e-47
 Identities = 162/188 (86%), Gaps = 16/188 (9%)
 Strand=Plus/Plus

Query  119  GCACTTCACCAAAGGTCGATGTAAACATCAAACGATA-TTTTTACTTCTCGGTGACAAGA  177
            |||||||||| ||||||| ||  |||||||||||||| ||||||||||| ||||||| | 
Sbjct  488  GCACTTCACCGAAGGTCG-TG--AACATCAAACGATATTTTTTACTTCTTGGTGACAGGG  544

Query  178  TATGGGTTAGGACTTG-T-----T----CCAGCTCTATGCTCGCTTGTTGGAGTTGTTGT  227
            |||| ||||||||||| |     |    ||||||||||||||||||||||||||||||||
Sbjct  545  TATGTGTTAGGACTTGTTCCAGCTCAGACCAGCTCTATGCTCGCTTGTTGGAGTTGTTGT  604

Query  228  AACATATTTTATGGAACTCAATAGCACAATTCTAAAGC-TTCTGTGTCAATCGCTACTAC  286
            ||||||||||||||| ||| |||||||||||||| ||| || |||||||| ||||| |||
Sbjct  605  AACATATTTTATGGATCTCCATAGCACAATTCTATAGCCTT-TGTGTCAACCGCTATTAC  663

Query  287  TAGAATGA  294
            ||||||||
Sbjct  664  TAGAATGA  671



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13572292230


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5