BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg903265 Length=294 Score E Sequences producing significant alignments: (Bits) Value AT2G44280.1 | Symbols: | Major facilitator superfamily protein... 444 2e-124 AT3G04485.1 | Symbols: | other RNA | chr3:1198114-1200104 FORW... 189 1e-47 > AT2G44280.1 | Symbols: | Major facilitator superfamily protein | chr2:18301350-18304284 REVERSE LENGTH=1959 Length=1959 Score = 444 bits (240), Expect = 2e-124 Identities = 278/296 (94%), Gaps = 3/296 (1%) Strand=Plus/Plus Query 1 TATGCAGAGTGTGTTGATTGGTTCGGAACT-GGTGGATGTGCTTTCGTTTGTGGGCCATT 59 |||||||||||| |||||||||||| |||| || ||||||||||||||||||||| |||| Sbjct 1452 TATGCAGAGTGTCTTGATTGGTTCGAAACTCGGGGGATGTGCTTTCGTTTGTGGGTCATT 1511 Query 60 AAGCTTCTTAGACAAAATGTTATGTGTGCTTGCTTTATATGTTCTTCAGTTACATCAAAG 119 |||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||| | Sbjct 1512 AAGCTTCTTAGACAAAATGTCATGTGGGCTTGCTTTATATGTTCTTCAGTCACATCAAGG 1571 Query 120 CACTTCACCAAAGGTCGATGTAAACATCAAACG-ATATTTTTACTTCTCGGTGACAAGAT 178 ||||||||||||||| || |||||||||||| | |||||||||||||||||||||||||| Sbjct 1572 CACTTCACCAAAGGTTGACGTAAACATCAAA-GAATATTTTTACTTCTCGGTGACAAGAT 1630 Query 179 ATGGGTTAGGACTTGTTCCAGCTCTATGCTCGCTTGTTGGAGTTGTTGTAACATATTTTA 238 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1631 ATGGGTTAGGACTTGTTCCAGCTGTATGCTCGCTTGTTGGAGTTGTTGTAACATATTTTA 1690 Query 239 TGGAACTCAATAGCACAATTCTAAAGCTTCTGTGTCAATCGCTACTACTAGAATGA 294 |||||||| ||||||| |||||||||| |||||||||| ||||||||||||||||| Sbjct 1691 TGGAACTCGATAGCACGATTCTAAAGCCTCTGTGTCAACCGCTACTACTAGAATGA 1746 > AT3G04485.1 | Symbols: | other RNA | chr3:1198114-1200104 FORWARD LENGTH=878 Length=878 Score = 189 bits (102), Expect = 1e-47 Identities = 162/188 (86%), Gaps = 16/188 (9%) Strand=Plus/Plus Query 119 GCACTTCACCAAAGGTCGATGTAAACATCAAACGATA-TTTTTACTTCTCGGTGACAAGA 177 |||||||||| ||||||| || |||||||||||||| ||||||||||| ||||||| | Sbjct 488 GCACTTCACCGAAGGTCG-TG--AACATCAAACGATATTTTTTACTTCTTGGTGACAGGG 544 Query 178 TATGGGTTAGGACTTG-T-----T----CCAGCTCTATGCTCGCTTGTTGGAGTTGTTGT 227 |||| ||||||||||| | | |||||||||||||||||||||||||||||||| Sbjct 545 TATGTGTTAGGACTTGTTCCAGCTCAGACCAGCTCTATGCTCGCTTGTTGGAGTTGTTGT 604 Query 228 AACATATTTTATGGAACTCAATAGCACAATTCTAAAGC-TTCTGTGTCAATCGCTACTAC 286 ||||||||||||||| ||| |||||||||||||| ||| || |||||||| ||||| ||| Sbjct 605 AACATATTTTATGGATCTCCATAGCACAATTCTATAGCCTT-TGTGTCAACCGCTATTAC 663 Query 287 TAGAATGA 294 |||||||| Sbjct 664 TAGAATGA 671 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 13572292230 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5