BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg903266

Length=234
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G04490.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   200    4e-51


> AT3G04490.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT4G38092.1); 
Has 75 Blast hits to 64 proteins in 20 species: Archae - 0; 
Bacteria - 0; Metazoa - 36; Fungi - 0; Plants - 22; Viruses 
- 0; Other Eukaryotes - 17 (source: NCBI BLink). | chr3:1200642-1209869 
FORWARD LENGTH=3687
Length=3687

 Score =  200 bits (108),  Expect = 4e-51
 Identities = 173/200 (87%), Gaps = 21/200 (11%)
 Strand=Plus/Plus

Query  41   CTCCGCCATTTCACACTGCTCAACGCCGCCACTTTCTTTCTTCGATCGAATCTTCA--T-  97
            |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||  | 
Sbjct  1    CTCCGCCATTTCACACTGCTCAACGCCGCCACTTTCCTTCTTCGATCGACTCTTCATCTC  60

Query  98   C-T-T-CTTATTCTTC---ACACTTTCCAATCAACTCGATCAGATTTTTCAGATTTTTCT  151
            | | | ||| ||||||   |||||||||||||||||||||||||    |    |||||||
Sbjct  61   CTTCTCCTTCTTCTTCTTTACACTTTCCAATCAACTCGATCAGA----T----TTTTTCT  112

Query  152  ACTTGGAAAGCGACGAGACTGTTGATTTTTCCGGCTGCCGGAATCGGTGCTTCAGGGAGG  211
            ||||||||||||||||||||||||||||||||||||||||||||| | ||||| |  |||
Sbjct  113  ACTTGGAAAGCGACGAGACTGTTGATTTTTCCGGCTGCCGGAATCAGCGCTTC-G--AGG  169

Query  212  GAGGAGATGTTAGGGTTTTC  231
             || ||||||||||||||||
Sbjct  170  -AGAAGATGTTAGGGTTTTC  188



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10556227290


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5