BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg903298
Length=297
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04735.1 | Symbols: RALFL21 | RALF-like 21 | chr3:1292408-12... 383 5e-106
> AT3G04735.1 | Symbols: RALFL21 | RALF-like 21 | chr3:1292408-1292725
REVERSE LENGTH=318
Length=318
Score = 383 bits (207), Expect = 5e-106
Identities = 264/290 (91%), Gaps = 9/290 (3%)
Strand=Plus/Plus
Query 1 ATGaaaaaaaCAAATAGGTTTATGGTAGTGGCAACATTCATAGCATGTGTGTTCATAAGC 60
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 10 ATGAAAATAACAAATAGGTTTATGCTAGTGGCAACATTCATAGCATGTGTGTTCATAAGC 69
Query 61 AGCATGAACATGACGGTTGGAAAAGTAATTGGGTATCCAGGATTGA-GACCTGATCTCCC 119
||||||||||||||||||||||||||||||||||||||||| |||| | |||||||| ||
Sbjct 70 AGCATGAACATGACGGTTGGAAAAGTAATTGGGTATCCAGGGTTGAAG-CCTGATCTTCC 128
Query 120 TTGTGATCATCATCAGTATCCTTCTGCATGTGCTCCATCCGAACAACCGGTGAATCCGTA 179
|||||||||||||| |||||||||||||||||| || ||||||||||| |||||||| ||
Sbjct 129 TTGTGATCATCATCGGTATCCTTCTGCATGTGCACCCTCCGAACAACCAGTGAATCCTTA 188
Query 180 CAAACGGGGATGT-G-AACTAATACATAGATGTAGACGTGATCCACCTCCA-C-CCA-TT 234
|| |||||||||| | || |||||||||||||||||| ||| |||| || | ||| ||
Sbjct 189 CAGACGGGGATGTAGTAA--AATACATAGATGTAGACGCGATTCACCCCCTGCACCAATT 246
Query 235 TCTAGAAAAATGTTAATACAAGCTCAATTTATTTATAATAATGCATATAA 284
||||||||||||||||||| || |||||| ||||||||||||||||||||
Sbjct 247 TCTAGAAAAATGTTAATACGAGGTCAATTAATTTATAATAATGCATATAA 296
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13723095477
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5