BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg903313

Length=384
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G02720.1 | Symbols:  | Class I glutamine amidotransferase-li...   243    1e-63


> AT3G02720.1 | Symbols:  | Class I glutamine amidotransferase-like 
superfamily protein | chr3:586224-588365 FORWARD LENGTH=1556
Length=1556

 Score =  243 bits (131),  Expect = 1e-63
 Identities = 164/179 (92%), Gaps = 5/179 (3%)
 Strand=Plus/Plus

Query  40   GATTATATGGAAGACTATGAAGTCAAAGTCCCTTTCCAGTCCCTTCAAGCTTTGGGATGT  99
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  728  GATTATATGGAAGACTATGAAGTCAAAGTGCCTTTCCAGTCCCTTCAAGCTTTGGGATGT  787

Query  100  CATGTTGATGCGGTTTGTCCAGCAAAGAAGAAGACTGATGAACGTTTCCCAACCGCAATC  159
            || ||||||||||||||||||| |  ||||||| ||| ||| || | |||||| ||||||
Sbjct  788  CAAGTTGATGCGGTTTGTCCAG-A--GAAGAAGGCTGGTGATCGCTGCCCAACTGCAATC  844

Query  160  CATGACGTCTTGAGGGTGACCAAACTTACAGTGAAAAAACAGGCCACACTTTTGCTTTA  218
            |||||| | ||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct  845  CATGAC-T-TTGAGGGTGACCAAACTTACAGTGAGAAACCAGGCCACACTTTTGCTTTA  901


 Score =  165 bits (89),  Expect = 3e-40
 Identities = 117/131 (89%), Gaps = 0/131 (0%)
 Strand=Plus/Plus

Query  216   TTATGATGATCTGGTCATTCCGGGAGGCAGAGCTCCAGAATATCTAGCATTGAACAAACA  275
             |||||||| |||||||||||| ||||||||||| ||||||||||| || |||||| ||||
Sbjct  934   TTATGATGCTCTGGTCATTCCTGGAGGCAGAGCACCAGAATATCTGGCCTTGAACGAACA  993

Query  276   CGTCCTTAACATGGGTAAAGAGTTCATGAATTCTGAGAAACCAGTTACATCTACTTCCCA  335
              ||||||||||| | ||||||||||||||||||||||||||||||| | |||| || |||
Sbjct  994   TGTCCTTAACATAGTTAAAGAGTTCATGAATTCTGAGAAACCAGTTGCGTCTATTTGCCA  1053

Query  336   CAGACAACAGA  346
             | |||||||||
Sbjct  1054  CGGACAACAGA  1064



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18096389640


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5