BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg903316
Length=912
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04880.1 | Symbols: DRT102 | DNA-damage-repair/toleration pr... 1299 0.0
> AT3G04880.1 | Symbols: DRT102 | DNA-damage-repair/toleration
protein (DRT102) | chr3:1346273-1347377 REVERSE LENGTH=1105
Length=1105
Score = 1299 bits (703), Expect = 0.0
Identities = 861/934 (92%), Gaps = 23/934 (2%)
Strand=Plus/Plus
Query 1 ATGGCCGGAGCTGTTTCTGCCGTCGATCAACCGTTGAAAATCATCACCGGAGCCGATGAC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 15 ATGGCCGGAGCTGTTTCTGCCGTCGATCAACCGTTGAAAATCATCACCGGAGCTGATGAC 74
Query 61 TTTGGAGCGAGCCTCAAGGACGCGATGGTATCTCACCTCCGTTCCCTCGGCATAGACGTG 120
|||||||||||||||||||||||||||||| | |||||||| || |||||||||||||||
Sbjct 75 TTTGGAGCGAGCCTCAAGGACGCGATGGTAACACACCTCCGCTCTCTCGGCATAGACGTG 134
Query 121 GAGGATACCGGAGTG---------TA-----CTGGATC-G--G-C---CGCCGCGTCTCA 159
||||||||||||||| || ||||||| | | | |||||||||||
Sbjct 135 GAGGATACCGGAGTGTCCTCTTACTACTCTGCTGGATCTGAAGTCGGTCGCCGCGTCTCC 194
Query 160 GCTTCGTCTTCTTCCGAAGTTCGTGGCTTAGTCTGCTGCGGCACCGGCGTCGGAGTTGCG 219
||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 195 GCTTCATCGTCTTCCGAAGTTCGCGGCTTAGTCTGCTGCGGCACCGGCGTCGGAGTTGCG 254
Query 220 ATGTTCGCTAACAAGTTCCCCGGAGTCTACGCCGCCACTTGTCTCTCCGTCGAGGACGCC 279
|||||||| ||||||||||| || |||||||| |||||||||||||||||||| ||||||
Sbjct 255 ATGTTCGCCAACAAGTTCCCGGGCGTCTACGCAGCCACTTGTCTCTCCGTCGAAGACGCC 314
Query 280 GTGAACGCTCGATCAATCAGCAACTGCAACGTCCTCGCACTCTCCGGCATCAAAACCTCC 339
|| |||||||||||||| ||||| ||||| ||||||||| |||||||||||||||| |||
Sbjct 315 GTCAACGCTCGATCAATAAGCAATTGCAATGTCCTCGCATTCTCCGGCATCAAAACATCC 374
Query 340 CCCGAAACCGCCGTAGAAATCTTCGACGCTTGGATCAAAACTCCGTTT-AAATCCCCTTG 398
|| ||||||||| | ||||||||||||||||||||||||||||| ||| ||||| |||||
Sbjct 375 CCGGAAACCGCCTTGGAAATCTTCGACGCTTGGATCAAAACTCC-TTTCAAATCTCCTTG 433
Query 399 TCCTGCATCCGGATCCGAGCCATGGAGCTCAGATATCTCTTCCTTCCTTGACAATTCTCT 458
|||||| ||||||||||| ||||||||||||| ||||||||||||||| |||||||||||
Sbjct 434 TCCTGCGTCCGGATCCGAACCATGGAGCTCAGTTATCTCTTCCTTCCTCGACAATTCTCT 493
Query 459 GTCCGAGATGTCTCAGATCGGAAAATCAACCGCCACCGATTCAACAACCAAGAAGATCGA 518
||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||
Sbjct 494 CTCCGAGATGTCTCAGATTGGAAAGTCAACCGCCGGCGATTCAACAACCAAGAAGATCGA 553
Query 519 TGAAACAACCGCGTCTTGCGCGATTTGCTGCTTGGCGAAGAACAGAGAGTTCACTCCAGT 578
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 554 TGAAACAACCGCGTCTTGCGTAATTTGCTGCTTGGCGAAGAACAGAGAGTTCACTCCAGT 613
Query 579 GGACATCATGCCGGGAGGCTCGATGAAGATCGTGAGGGAGACGCCGACGTCGGCGATAGT 638
||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||
Sbjct 614 GGACATCATGCCGGGAGGCTCGATGAAGATCGTTAGAGAGACGCCGACGTCGGCGATTGT 673
Query 639 AAGATTCAAAGCGGGAAGTGTGGAACCGGCGCATCACCACACATTCGGCCATGACCTTGT 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 674 AAGATTCAAAGCGGGAAGTGTGGAACCGGCGCATCACCACACATTCGGCCATGACCTTGT 733
Query 699 AGTCATTAAGGGGAAGAAGAGTGTTTGGAATCTGAGCAAGAAGGAGAGAGCTGATCTCAT 758
|||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||||| |
Sbjct 734 AGTCATAAAGGGAAAGAAAAGTGTGTGGAATCTGAGCAAGAAGGAGAGAGCTGATCTCGT 793
Query 759 TGACGGCGATTACCTATTCACGCCGGCCGGTGATGTTCATCGAGTCAAGTATCACGAAGA 818
||||||||||||||||||||| || |||||||||||||| |||||||| |||||||||||
Sbjct 794 TGACGGCGATTACCTATTCACTCCCGCCGGTGATGTTCACCGAGTCAAATATCACGAAGA 853
Query 819 CACTGAGTTCTTCATCACTTGGGATGGCCATTGGGACATTTTCCTTGACGAAGACATTGA 878
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||
Sbjct 854 CACTGAGTTCTTCATCACTTGGGATGGCCATTGGGACATATTCCTTGACGAAGACCTCGA 913
Query 879 AACTGCAAAGAAAGCCATCGAAGAAGAAGCTTGA 912
||||||||||||||||||||||||||||||||||
Sbjct 914 AACTGCAAAGAAAGCCATCGAAGAAGAAGCTTGA 947
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44557688389
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5