BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg903317
Length=651
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04890.2 | Symbols: | Uncharacterized conserved protein (DU... 811 0.0
> AT3G04890.2 | Symbols: | Uncharacterized conserved protein (DUF2358)
| chr3:1347646-1349202 FORWARD LENGTH=868
Length=868
Score = 811 bits (439), Expect = 0.0
Identities = 600/673 (89%), Gaps = 29/673 (4%)
Strand=Plus/Plus
Query 1 ATGGCGGGAGTGGCTGGCCAGATATCTATCAGC-CGATCGTT-GACCTTGAGGAGGGTTA 58
||||||||||||||| ||||||||||||||||| | ||| || |||||| ||||||||||
Sbjct 63 ATGGCGGGAGTGGCTTGCCAGATATCTATCAGCTC-ATC-TTCGACCTTTAGGAGGGTTA 120
Query 59 A-CCATCGGCCGCGATGCTTCTCTGGTTCGCCGGAGAAGAAAACACCGGCTGTTTTGAAG 117
| | || |||| || |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 ATCAAT-GGCCACGGTGCTTCTCTGGTTCGCCGGAGAAGAAAACACCAGCTGTTTTGAAG 179
Query 118 TGGGCGGTTGGTGGAGTCACTGAGTTGCTTCGGCT-ATTCTCCGGTGCTCCGTCTCCATC 176
||||||||| ||||||| ||||| || || ||| | | ||||||||||||||||| || |
Sbjct 180 TGGGCGGTTAGTGGAGTTACTGAATTTCTCCGGTTGA-TCTCCGGTGCTCCGTCTTCAAC 238
Query 177 CTCCATCCCTACAAATAAAGATAGATCAAAGTATGAGGTTTCTGCTCGAGATGTTGATGA 236
||||||| |||||||||| ||| |||||||| |||||||| ||||| ||||||| |||||
Sbjct 239 CTCCATCGCTACAAATAAGGATCGATCAAAGAATGAGGTTACTGCTGGAGATGTCGATGA 298
Query 237 CGTGATGGAGATTTTGAGATCAGATTATCGAAATGCCTACTTCGTCACTGGAATCTTGAC 296
||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 299 TGTGATGGGGATTTTGAGATCAGATTATCGAAATTTCTACTTCGTCACTGGAGTCTTGAC 358
Query 297 TTCTTCAATTTACTCGGATGAATGCATCTTCGAGGATCCGACTATCAGCTTCCAGGGTAC 356
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 359 TTCTGCAATTTACTCGGATGATTGCATCTTCGAGGATCCGACTATCAGCTTCCAGGGTAC 418
Query 357 AGAGTTGTATGAACGCAACTTGAAATTACTTGTTCCGTTCCTCGAAGATGCATCCATTGA 416
|||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 419 AGAGCTGTATGAACGCAACTTGAAGTTACTGGTTCCGTTCCTCGAAGATGCATCCATTGA 478
Query 417 ACTGCAAAATATGGACAAGAGTGAGTCGTCCGAAAGAAACTATATACTGGCGACATGGAA 476
||||||||||||||| ||||||||||||||| |||||||||||||||| ||||| |||||
Sbjct 479 ACTGCAAAATATGGAGAAGAGTGAGTCGTCCCAAAGAAACTATATACTAGCGACGTGGAA 538
Query 477 GCTAAGGACTTACCTGAAACTTCCATGGAGACCACTAATATCGATCAACGG-AAGTACGG 535
|||||| ||||||||||| || |||||||||||| | |||||||||||||| || |||||
Sbjct 539 GCTAAGAACTTACCTGAAGCTGCCATGGAGACCATTGATATCGATCAACGGGAA-TACGG 597
Query 536 TTTATGATCTGGATCGAGACTTCAAA--A-T--T----GT----GA--G-G---CATGTC 576
|||||||||||||| |||||||||| | | | || || | | ||||||
Sbjct 598 TTTATGATCTGGATAAAGACTTCAAAGCACTGGTTTTTGTACAAGATTGTGAGGCATGTC 657
Query 577 GAGAGCTGGAATGTCTCTGCGCTAGAAGCAGTCGGGCAGATATTCACCGTCAAGTCTTTT 636
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 658 GAGAGCTGGAATGTCTCTGCGCTAGAAGCAATCGGGCAGATATTCACCGTCAAGTCTTTT 717
Query 637 CCCTTCGGTGACT 649
|||||| ||||||
Sbjct 718 CCCTTCCGTGACT 730
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31446576022
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5