BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg903319

Length=264
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G04903.1 | Symbols:  | Defensin-like (DEFL) family protein |...   366    5e-101


> AT3G04903.1 | Symbols:  | Defensin-like (DEFL) family protein 
| chr3:1350510-1350989 FORWARD LENGTH=264
Length=264

 Score =  366 bits (198),  Expect = 5e-101
 Identities = 245/267 (92%), Gaps = 6/267 (2%)
 Strand=Plus/Plus

Query  1    ATGAAGAGTTTTTTGGTAGCGTTTCTTATTGTGCTCGTCTTCTTCTCTGCTGA-ATTGAA  59
            |||||||||||||||||||||||||||||||||||||||||||||| || ||| || |||
Sbjct  1    ATGAAGAGTTTTTTGGTAGCGTTTCTTATTGTGCTCGTCTTCTTCTGTGTTGAGAT-GAA  59

Query  60   AATAGGAAATGGATTCGAAATACCA-GTAGTACCAGAACCAACAGGAAAATGGTGTGGAT  118
            |||||||||||||||| |||||| | | |||||||||||| |||||||||||||| ||||
Sbjct  60   AATAGGAAATGGATTCAAAATAC-ATGAAGTACCAGAACCCACAGGAAAATGGTGCGGAT  118

Query  119  ATTCAGTGCCGATGAAACCATGCACAAACGATGAAT-GCATTAAACAATGTATTGCGGAA  177
            |||| ||||||||||||||||||| ||||||||| | || |||||| |||||||||||||
Sbjct  119  ATTCGGTGCCGATGAAACCATGCATAAACGATGA-TCGCGTTAAACGATGTATTGCGGAA  177

Query  178  AATACGCATGGTTGGCTGATGACTACTGGCAAGTGCACATCTATCCCAAGCTTAAAAGAT  237
            ||||||||||| ||| ||||| ||||||||| |||||||||||||||||||||||| |||
Sbjct  178  AATACGCATGGCTGGTTGATGGCTACTGGCATGTGCACATCTATCCCAAGCTTAAAGGAT  237

Query  238  TGTTACTGTATCCATCAGTGTCCCTAA  264
            ||||||||||| |||||||||||||||
Sbjct  238  TGTTACTGTATGCATCAGTGTCCCTAA  264



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12064259760


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5