BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg903326
Length=240
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04943.1 | Symbols: LCR41 | low-molecular-weight cysteine-ri... 361 2e-99
> AT3G04943.1 | Symbols: LCR41 | low-molecular-weight cysteine-rich
41 | chr3:1368248-1368678 REVERSE LENGTH=246
Length=246
Score = 361 bits (195), Expect = 2e-99
Identities = 232/248 (94%), Gaps = 10/248 (4%)
Strand=Plus/Plus
Query 1 ATGAAAAACTCTTCTCTT-TTATTCATAC-TAAT-T-G---TCGTTATTTCTTCTTCAGA 53
|||||||||||||||||| || ||||||| || | | | |||||||||||||||||||
Sbjct 1 ATGAAAAACTCTTCTCTTCTT-TTCATACTTATTGTCGTTTTCGTTATTTCTTCTTCAGA 59
Query 54 AAACGGCAAAATGATAGGAGAAGCAAAAAAGTGTAGTAATTCATGGATTTGTGAAGGAGA 113
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 AAACGGGATCATGATAGGAGAAGCAAAAAAGTGTAGTAATTCATGGATTTGTGAAGGAGA 119
Query 114 CGAGAAATGCAAAGAGAAGTGCATGGCTGACTACAAAGGCAATGGAACATGTTATTACCC 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CGAGAAATGCAAAGAGAAGTGCATGGCTGACTACAAAGGCAATGGAACATGTTATTACCC 179
Query 174 ATCTCCTCCTTCAAAACAACATCCTGAGTT-TTCTTATCCTACATGCTGGTGTGGGTTTC 232
|||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 180 ATCTCCTCCTTCAAAACAACATCCTGAGTTCTT-TTATCCTACATGCTGGTGTGGGTTTG 238
Query 233 AGTGTTAA 240
| ||||||
Sbjct 239 ATTGTTAA 246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10857833784
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5