BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg903327
Length=231
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04945.1 | Symbols: LCR18 | low-molecular-weight cysteine-ri... 300 4e-81
> AT3G04945.1 | Symbols: LCR18 | low-molecular-weight cysteine-rich
18 | chr3:1369114-1369532 REVERSE LENGTH=231
Length=231
Score = 300 bits (162), Expect = 4e-81
Identities = 212/235 (90%), Gaps = 8/235 (3%)
Strand=Plus/Plus
Query 1 ATGAAGAACTCTTCGATTCTCTTCGTACTAATTGTTGTT-TTGTTT-TCTTTTAATTGTT 58
|||||||||||||| |||||||||||||||||| ||||| || ||| || ||| || |
Sbjct 1 ATGAAGAACTCTTCCATTCTCTTCGTACTAATTATTGTTGTT-TTTCTCATTT-CTT-CT 57
Query 59 TGA-GAAACAAGAAGATGGTAGGAGAAGCAAAGAAGTGCGAGAAGACGTGGACTTGTGAG 117
| | ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 58 TCAGGAAACAAGAAGATGGTAGGAGAAGCAAAGAAATGCGACCAGACGTGGACTTGTGAA 117
Query 118 GGAGAAGACAAATGCAGAGAAAAGTG-CAAGACTTTGTACAATGGAGATGGAATCTGTGA 176
|||||||||||||||||||||||||| | ||||||| ||||||||| |||| |||||||
Sbjct 118 GGAGAAGACAAATGCAGAGAAAAGTGTC-TGACTTTGCACAATGGAGTTGGAGTCTGTGA 176
Query 177 TTTGTACACTGCTCCTTTGGTTCCTAAGCAATGTTTCTGCCACTATGATTGCTAA 231
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 177 TTTGTACACTGCTCCTTTGGTTCCTAAGCAATGTTTTTGCCACTATGATTGCTAA 231
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10405424043
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5