BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg903332

Length=1278
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G05130.1 | Symbols:  | BEST Arabidopsis thaliana protein mat...   412    3e-114


> AT3G05130.1 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: Prefoldin chaperone subunit family protein (TAIR:AT5G27330.1); 
Has 171032 Blast hits to 82560 proteins in 3364 
species: Archae - 2835; Bacteria - 33550; Metazoa - 71995; Fungi 
- 13365; Plants - 9598; Viruses - 592; Other Eukaryotes 
- 39097 (source: NCBI BLink). | chr3:1433475-1435379 REVERSE 
LENGTH=1905
Length=1905

 Score =  412 bits (223),  Expect = 3e-114
 Identities = 305/343 (89%), Gaps = 11/343 (3%)
 Strand=Plus/Plus

Query  563   TTGAGCTTCAGGAGGGTATTTCTAGTCGGGAG-GCAAATCTTGTTGAGCTGAATCAAAAG  621
             |||||||| ||||| |||||| |||||||||| |  || |||||||||||||||| ||||
Sbjct  1136  TTGAGCTTGAGGAGCGTATTTTTAGTCGGGAGAG-GAAGCTTGTTGAGCTGAATCGAAAG  1194

Query  622   GCTGTTGAGCTAACTCATGCT-TTGGCTAAGCTACAAAAGGATTATGATGATCAAACCAA  680
             |||| |||||||||||||||| || |||  ||| |||||| ||| |||||||||||||||
Sbjct  1195  GCTGATGAGCTAACTCATGCTGTT-GCTGTGCTGCAAAAGAATTGTGATGATCAAACCAA  1253

Query  681   GACTAACGACAAGCTTAGCTGCAAAGTTGGTCAGCTAAGCGATGCTCTTGCGCAAGTTGA  740
             || |||||  ||||||||||||||||||| |||||||||| |||||||||||||||||  
Sbjct  1254  GATTAACGGTAAGCTTAGCTGCAAAGTTGATCAGCTAAGCAATGCTCTTGCGCAAGTT--  1311

Query  741   GAAGAAGCTCAAGAGAGAAGAAGCTGATAAGGCACTTGATGAGGAGAAGAGACATGGAGA  800
                | |||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  1312  ---G-AGCTCAGGAGAGAAGAAGCTGATAAGGCACTTGATGAGGAGAAGAGAAATGGAGA  1367

Query  801   GGATCTTAAGGCAGAGGTTTTAAAATCAGAGAAGATGGTTGCAAAAACTTTAGAAGATTT  860
             ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||  |
Sbjct  1368  GGATCTTAAGGCAGAGGTTTTGAAATCAGAGAAGATGGTTGCAAAAACTCTAGAAGAGCT  1427

Query  861   TGAGAAAGTTAAGATCGCGCGTGAGAGTTTGTTTTCAAGCGAA  903
             ||||||||||||||| | |||| ||||||| |||||| |||||
Sbjct  1428  TGAGAAAGTTAAGATTGAGCGTAAGAGTTTATTTTCA-GCGAA  1469


 Score =  355 bits (192),  Expect = 5e-97
 Identities = 243/268 (91%), Gaps = 2/268 (1%)
 Strand=Plus/Plus

Query  913   CTCGAGAAA-GCTATGGATGCTCTGAAAACAGAACTAGAATCAGCTGGAATGGATGCAGA  971
             ||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct  1540  CTC-AGAAAGGCTATGGAAGCTCTGAAAACAGAACTAGAATCAGCTGGAATGGATGCAAA  1598

Query  972   ACGCAACTTGGGGATGCTAAAGAATGCTGCATCTATGTTGTCTCAACCAGAGAACCGAGA  1031
             ||||| | ||| ||||||||||| ||||||||||||| | || |||  ||||||||||||
Sbjct  1599  ACGCAGCATGGTGATGCTAAAGAGTGCTGCATCTATGCTATCCCAATTAGAGAACCGAGA  1658

Query  1032  AGATAGATTGATTAGCGAGCAACAGAATCGAGAAAAGGGAACAGAATCCTATGCGGTGGA  1091
             ||||||||||||||| ||| ||||||| |||||||  ||||| ||| |||||||| ||||
Sbjct  1659  AGATAGATTGATTAGTGAGGAACAGAAGCGAGAAATTGGAACTGAACCCTATGCGATGGA  1718

Query  1092  GCTAGAGTCGATAGAGAAAGCATTCAGAAACAAAGAGGGCATAATCGAGGAAATGAAGAA  1151
             ||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||
Sbjct  1719  GCTAGAGTCGATAGAGAAAGCTTTCAAAAACAAAGAGGACATAATCGAGGAAATGAAGAA  1778

Query  1152  AGAAGCTGAGATCATGAAACAATCAACG  1179
             |||||||||||||||||| |||||||||
Sbjct  1779  AGAAGCTGAGATCATGAAGCAATCAACG  1806


 Score =  172 bits (93),  Expect = 6e-42
 Identities = 112/121 (93%), Gaps = 1/121 (1%)
 Strand=Plus/Plus

Query  109  TTGGTGAAGGAGAAGAGTGATAGAGAGAGCGAGATTCGGGTTTTGAAAGGGGAAGCGATT  168
            ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct  406  TTGGTGAAGGAGAAGAGTGATAGAGAGAGTGAGATTAGGGTTTTGAAAGGGGAAGCGATT  465

Query  169  GAGCTTATGGGAAAGGTTGAGATGGACAAGGAACAGTTGAGGAAGGTCTGTGAGTGTGAG  228
            ||||||| ||| ||||||||||| || |||||||||||||||||||| ||||| || |||
Sbjct  466  GAGCTTACGGGTAAGGTTGAGATTGAGAAGGAACAGTTGAGGAAGGTTTGTGA-TGAGAG  524

Query  229  G  229
            |
Sbjct  525  G  525



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 62851082340


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5