BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg903335

Length=468
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G05000.1 | Symbols:  | Transport protein particle (TRAPP) co...   767    0.0  


> AT3G05000.1 | Symbols:  | Transport protein particle (TRAPP) 
component | chr3:1387175-1388756 REVERSE LENGTH=850
Length=850

 Score =  767 bits (415),  Expect = 0.0
 Identities = 443/457 (97%), Gaps = 0/457 (0%)
 Strand=Plus/Plus

Query  12   TGGTCGATTCTACGCTAATAAGCCGGAACTCGCCGCTCGGAGGATCGAGGCCATTGGTTA  71
            ||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  125  TGGCCGATTCTATGCTAACAAGCCGGAACTCGCCGCTCGGAGGATCGAGGCCATTGGTTA  184

Query  72   TCAGGTCGGCCACCAGCTCTCCGAGAGGTACACTATGGAAAGACCAAGGTTCAGTGACCA  131
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  185  TCAGGTCGGCCACCAGCTCTCCGAGAGGTACACTATGGAAAGACCAAGGTTCAGTGACCA  244

Query  132  TCTAGAGGCAATCAAGTTTATCTGCAAAGACTTCTGGTCTGAGGTCTTCAAGAAGCAGAT  191
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  245  TCTAGAGGCAATCAAGTTTATCTGCAAAGACTTCTGGTCTGAGGTCTTCAAGAAGCAGAT  304

Query  192  AGATAACTTAAAGACAAATCACCGGGGTACTTTTGTATTGCAAGACAACAAGTTCCGGTG  251
             ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  305  TGATAATTTAAAGACAAATCACCGGGGTACTTTTGTATTACAAGACAACAAGTTCCGGTG  364

Query  252  GTTGTCTCGTGTCTCAATTGACCCTTCATCTGAGAACGAAACCGAAGATCCATCTACTCC  311
            |||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||
Sbjct  365  GTTGTCTCGTGTCTCAATTGACCCTTCATCTGAGAATGAAACCCAAGATCCTTCTACTCC  424

Query  312  AGGGGAAAGCAAAGCAGCACAAGCGGTGAGCATGTACCTCTATTTCCCATGTGGAATCAT  371
            ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct  425  AGGGGAAAGCAAAGCTGCACAAGCGGTGAGCATGTACCTCTATTTCCCGTGTGGAATCAT  484

Query  372  AAGAGGTGTCCTCTCCAACTTGGGGATACCGTGTGCTGTCTCTGCAGATATATCAAGCCT  431
             ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  485  TAGAGGTGTCCTCTCCAACTTGGGGATACCTTGTGCTGTCTCTGCAGATATATCAAGCCT  544

Query  432  TCCCACATGCTCTTTCGTGATTCGGGTAAAGGCTTGA  468
            ||||||||||||||||||||||||||| |||||||||
Sbjct  545  TCCCACATGCTCTTTCGTGATTCGGGTCAAGGCTTGA  581



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22253727121


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5