BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg903337
Length=936
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05010.1 | Symbols: | Protein of unknown function, transmem... 1051 0.0
AT5G27210.1 | Symbols: | Protein of unknown function, transmem... 630 6e-180
> AT3G05010.1 | Symbols: | Protein of unknown function, transmembrane-40
| chr3:1389449-1391675 FORWARD LENGTH=1270
Length=1270
Score = 1051 bits (569), Expect = 0.0
Identities = 616/639 (96%), Gaps = 2/639 (0%)
Strand=Plus/Plus
Query 1 ATGCGAGTTCTCGGCGAGATTGCGGAGTCACCTTTC-TCGATTTCTCGGCTGAGCCCTAA 59
|||||||| ||| ||||||||||||||||||| ||| | |||||||||||| |||||| |
Sbjct 155 ATGCGAGTGCTCAGCGAGATTGCGGAGTCACCGTTCGT-GATTTCTCGGCTAAGCCCTGA 213
Query 60 TTCGACGGCCACCGGAGGGTTTATCGGCGGATGGGTCGGAAAGTGTCATGGGTTTCTGCA 119
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 214 TTCGACGGCCACCGGAGGGTTTATCGGCGGATGGGTCGGGAAGTGTCATGGGTTTCTTCA 273
Query 120 TAACACGGTTTTGGTTTTAGCATCTATTCTATTCGTCGCTTACTTAGCCTACGAGGCGAA 179
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 274 TAACACGGTTTTGGTTTTAGCATCTATTCTATTCGTCGCTTACTTAGCGTACGAGGCGAA 333
Query 180 GAAGAGCTTGTCCAAGTTGTCGAATCGGAGATCTTATATTATGATCGCCTATTATGGTTT 239
||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||
Sbjct 334 GAAGAGCTTGTCCAAGTTGTCTAATCGGAGATCTTACATTATGATTGCCTATTATGGTTT 393
Query 240 TCTTTGGCTTGTTAGCTTGCTCAATCTTGCTTGGTGTTGTCTTCAGGCATGGGAATGCAC 299
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 394 TCTTTGGCTTGTTAGCTTGCTCAATCTTGCTTGGTGTTGCCTTCAGGCATGGGAATGCAC 453
Query 300 TCCTGGGAAAGAAGTTATTTGGAATCTATTAACTTTGTTCACAACATCTGGAATGTTGTT 359
||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 454 TCCGGGGAAAGAAGTTATTTGGAATTTGTTAACTTTGTTCACAACATCTGGAATGTTGTT 513
Query 360 TCTGGAAGTAAGCTTGGTAGCCTTTCTCTTCCAAGGAAACTATGCAAGCGGTGCTGAAGC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 514 TCTGGAAGTAAGCTTGGTAGCCTTTCTCTTCCAAGGAAACTATGCAAGCGGTGCTGAAGC 573
Query 420 ATTAACACGAACTTTCCTCATCTCGGGGCTTGTTATAGGTCTCGATTTGCTTCTCAAGGC 479
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 574 ATTAACACGAACTTTCCTCATCTCGGGGCTTGTCATTGGTCTCGATTTGCTTCTCAAGGC 633
Query 480 AATTTATCTCTTTGGATTTGGAGTACCATTGTTTATCGACAACAATGAACATATACAAAA 539
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 634 AATTTATCTGTTTGGCTTTGGAGTACCATTGTTTATCGACAACAATGAACATATACATAA 693
Query 540 GTTCAAATGGGGCTTATGGGTCATCCACAAGCTCTTACTAGCTGGCATTTATGGTATGAT 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 694 GTTCAAATGGGGCTTATGGGTCATCCACAAGCTCTTACTAGCTGGCATTTATGGGATGAT 753
Query 600 ATTCTTCATGTACAACTCCAAATGGAGAGAGAGATTACC 638
|||||||||||||||||||||||||||||||||||||||
Sbjct 754 ATTCTTCATGTACAACTCCAAATGGAGAGAGAGATTACC 792
Score = 460 bits (249), Expect = 8e-129
Identities = 259/264 (98%), Gaps = 0/264 (0%)
Strand=Plus/Plus
Query 673 GCAAGACCTGCATTCTACAAGTACATAACTGTCATGCTCGCCTTAAATGGGCTCTCCCTA 732
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 794 GCAAGACCTGCATTCTACAAGTATATAACTGTCATGCTCGCCTTAAATGGGCTCTCCCTA 853
Query 733 TTTGCATGTGCTCTTACGGCAAACGGTGCTCATTTTGGATTATGGTTGTATGGGGTCACA 792
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 854 TTTGCATGTGCTCTTACGGCAAACGGTGCTCATTTTGGATTATGGTTGTATGGGATCACA 913
Query 793 AGTGTTTGTTACCACGCCTTCTATCTTCCTCTTTTGTATGTTACTTTTCTTGCAGACTTT 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 914 AGTGTTTGTTACCACGCCTTCTATCTTCCTCTTTTGTATGTTACTTTTCTTGCAGACTTT 973
Query 853 TTCCAGGAGGAAGATCTGAACTTGGAGAATGTCTACTATTCAGAGATGAAAGATGCTGGA 912
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 974 TTCCAGGAGGAAGATCTGAATTTGGAGAATGTCTACTATTCAGAAATGAAAGATGCTGGA 1033
Query 913 TTCTTCGACGCCGATTGGGAATAA 936
||||||||||| ||||||||||||
Sbjct 1034 TTCTTCGACGCTGATTGGGAATAA 1057
> AT5G27210.1 | Symbols: | Protein of unknown function, transmembrane-40
| chr5:9572100-9574135 REVERSE LENGTH=1187
Length=1187
Score = 630 bits (341), Expect = 6e-180
Identities = 551/649 (85%), Gaps = 27/649 (4%)
Strand=Plus/Plus
Query 1 ATGCGAGTTCTCGGCGAGATTGCGGAGTCACC-TTTCTCGATTTCTCGGCTGAGCCCTAA 59
||||||||||||| ||| ||||| |||||||| ||||| |||||| | ||| | ||||||
Sbjct 61 ATGCGAGTTCTCGACGAAATTGCAGAGTCACCATTTCT-GATTTCACCGCTAAACCCTAA 119
Query 60 TTCGACGGCCACCGGAGGGTTTATCGGCGGATGGGTCGGA-AAGTGTCATGGGTTTC-TG 117
|||||| |||| | || ||| |||||||| || ||||| ||| || ||| |
Sbjct 120 TTCGACAGCCA----ATGG-ATAT----AGATGGGTC-GATAAGTGCCAT-GGATTCTTA 168
Query 118 CATAACACGGTTTTGGTTTTAGCATCTATTC-TATTCGTCGCTTACTTAGCCTACGAGGC 176
|||||||||||| | ||| || ||| || | ||||||||||||||||| ||||| ||
Sbjct 169 CATAACACGGTTCTCGTTGCGGCTTCT-CTCTTCTTCGTCGCTTACTTAGCTTACGAAGC 227
Query 177 GAAGAAGAGCT-TGTCCAAGTTGTCGAATCGGAGATCTTATATTATGATCGCCTATTATG 235
||||||||| | |||| || | |||||||||||||||||||| ||||| || |||||||
Sbjct 228 GAAGAAGAG-TCTGTCTAAACTCTCGAATCGGAGATCTTATATCATGATTGCTTATTATG 286
Query 236 GTTTTCTTTGGCTTGTTAGCTTGCTCAATCTTGCTTGGTGTTGTCTTCAGGCATGGGAAT 295
||| |||||||||||||||||||||||||||||||||||| ||||| |||| |||||||
Sbjct 287 GTTGTCTTTGGCTTGTTAGCTTGCTCAATCTTGCTTGGTGCTGTCTCCAGGGTTGGGAAT 346
Query 296 GCACTCCTGGGAAAGAAGTTATTTGGAATCTATTAACTTTGTTCACAACATCTGGAATGT 355
| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 347 GTACTCCTGGGAAAGAAGTTGTTTGGAATCTGTTAACTTTGTTCACAACATCTGGAATGT 406
Query 356 TGTTTCTGGAAGTAAGCTTGGTAGCCTTTCTCTTCCAAGGAAACTATGCAAGCGGTGCTG 415
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
Sbjct 407 TGTTTCTGGAAGTAAGCTTGGTGGCTTTTCTCTTCCAAGGAAACTATGCAAGCGGTGCAG 466
Query 416 AAGCATTAAC-ACGAACTTTCCTCATCTCGGGGCTTGTTATAGGTCTCGATTTGCTTCTC 474
|||||||||| | |||| ||||| |||||||| || || | | ||| ||||||||||||
Sbjct 467 AAGCATTAACTA-GAACGTTCCTAATCTCGGGTTTTATTGTTGCTCTTGATTTGCTTCTC 525
Query 475 AAGGCAATTTATCTCTTTGGATTTGGAGTACCATTGTTTATCGACAACAATGAACATATA 534
|||||||||| |||||||||||||||||| ||||||||||| |||||||||||| || |
Sbjct 526 AAGGCAATTTTTCTCTTTGGATTTGGAGTGCCATTGTTTATTGACAACAATGAAAATGGA 585
Query 535 CAAAA-GTTCAAATGGGGCTTATGGGTCATCCACAAGCT-CTTACT-AGCTGGCATTTAT 591
|||| ||||||||||||||||||| |||| || ||||| || ||| | ||||| |||||
Sbjct 586 -AAAACGTTCAAATGGGGCTTATGGATCATTCATAAGCTTCT-ACTCA-CTGGCGTTTAT 642
Query 592 GGTATGATATTCTTCATGTACAACTCCAAATGGAGAGAGAGATTACCTG 640
|| ||| | ||||| ||||||||||| | |||||||| | ||| ||||
Sbjct 643 GGGATGGTGTTCTTGATGTACAACTCTAGGTGGAGAGAAAAATTGCCTG 691
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45763307917
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5