BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg903355

Length=666
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G05155.1 | Symbols:  | Major facilitator superfamily protein...   483    1e-135


> AT3G05155.1 | Symbols:  | Major facilitator superfamily protein 
| chr3:1448570-1451213 FORWARD LENGTH=1287
Length=1287

 Score =  483 bits (261),  Expect = 1e-135
 Identities = 318/346 (92%), Gaps = 2/346 (1%)
 Strand=Plus/Plus

Query  1    ATGGAGGGAGAGAGTAGTAGCATTGAGAGAGGATTATTATTGGTAAATAAGGAAGAGAGT  60
            ||||||||||||| |||||||||||||| ||||||||||||| |||  ||||||||||||
Sbjct  78   ATGGAGGGAGAGAATAGTAGCATTGAGAAAGGATTATTATTGATAAGGAAGGAAGAGAGT  137

Query  61   GCAAATACAACTCCACTTCTTGTCTTCACCGCTTTCATCATTGTCTCTGCCTACTTCTCC  120
            ||||||||||||||| |||||||||||||| ||||||||||||||||||| | |||||||
Sbjct  138  GCAAATACAACTCCATTTCTTGTCTTCACCACTTTCATCATTGTCTCTGCTTCCTTCTCC  197

Query  121  TTCGGCGTTGCCTTAGGCCACACTGCTGGTACAATGGCTTCCATTATGGAAGAGCTTGAT  180
            || |||||||||||||| || ||||||||||||||||| |||||||||||||| ||||||
Sbjct  198  TTTGGCGTTGCCTTAGGACATACTGCTGGTACAATGGCCTCCATTATGGAAGATCTTGAT  257

Query  181  CTTTCTATCGCACAATTTTCTGTATTTGGTTCGCTATTAACGTTTGGAGGAATGATTGGC  240
            ||||||||| |||||||||||||||||||||| ||||| || ||||||||||||||||| 
Sbjct  258  CTTTCTATCACACAATTTTCTGTATTTGGTTCACTATTGACATTTGGAGGAATGATTGGA  317

Query  241  GCAATATTTAGCGCCACGATTGCAGACTT-AGTTGGCCGTAAAATGACTTTGTGGATCGC  299
            ||| ||||||||||||| |||||||| || | ||||  |||||||||||||||||||| |
Sbjct  318  GCACTATTTAGCGCCACAATTGCAGA-TTCATTTGGTTGTAAAATGACTTTGTGGATCAC  376

Query  300  TGAGGTTTTCTGCATAAGTGGATGGCTTGCAATTGCACTAGCCAAG  345
            |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  377  TGAGGTATTCTGCATAAGTGGATGGCTTGCAATTGCACTAGCCAAG  422


 Score =  130 bits (70),  Expect = 2e-29
 Identities = 99/112 (88%), Gaps = 5/112 (4%)
 Strand=Plus/Plus

Query  411   ATCGGCATTTGGGATATGTTTAGGTTGTATCTCTATTGCATTAGCATTTGGACTGAAAGG  470
             ||||||||||||  |||||||||||||||||||| |||||||||| |||||| |||||||
Sbjct  1152  ATCGGCATTTGGTTTATGTTTAGGTTGTATCTCTCTTGCATTAGCGTTTGGATTGAAAGG  1211

Query  471   TGTTCCTTGG---A-TCGTAAATTTTACTCCCACTTTGGCATTTATAGGAAT  518
             ||| ||| ||   | | |||||| ||||||||||||||||||||||||||||
Sbjct  1212  TGTCCCTGGGGTTAAT-GTAAATGTTACTCCCACTTTGGCATTTATAGGAAT  1262


 Score =  122 bits (66),  Expect = 3e-27
 Identities = 66/66 (100%), Gaps = 0/66 (0%)
 Strand=Plus/Plus

Query  345   GGTACCAAAAGCTATATTGGGTCTGATACTTGTGGAACGATGGGGAAGAAGACCGCTTCT  404
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  989   GGTACCAAAAGCTATATTGGGTCTGATACTTGTGGAACGATGGGGAAGAAGACCGCTTCT  1048

Query  405   TATGGT  410
             ||||||
Sbjct  1049  TATGGT  1054



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32200088227


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5