BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg903382
Length=531
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05410.2 | Symbols: | Photosystem II reaction center PsbP f... 760 0.0
> AT3G05410.2 | Symbols: | Photosystem II reaction center PsbP
family protein | chr3:1554700-1561535 FORWARD LENGTH=1005
Length=1005
Score = 760 bits (411), Expect = 0.0
Identities = 494/533 (93%), Gaps = 9/533 (2%)
Strand=Plus/Plus
Query 1 ATGTCTCTGAAACCTTA-CT-TCTCT-CTATACTCATCACCCACAAATGCAAAA-TTCTC 56
||||||||||||||||| | ||||| ||||||||||| ||||| |||| |||| || ||
Sbjct 84 ATGTCTCTGAAACCTTATTTCTCTCTACTATACTCATCTCCCACTAATGTAAAACTT-TC 142
Query 57 CAACTTTTTGATTGCTCAACAACCCTCCGGTGACCGGAAAACTACCCCGGCGGAGGAGTT 116
|||||| || || |||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 143 CAACTTCTTAATCGCTCAACAACCCTCCGGTGACCTGAAAACTACCCCGGCCGAGGAGTT 202
Query 117 TTCTCCGCTGGTTGAGAAATTCAACCGGCGGCTTCTTCTGGGTGTAGGATCGTCCTCTGT 176
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 203 TTCTCCACTGGTTGAGAAATTCAACCGACGGCTTCTTCTGGGTGTAGGATCGTCCTCTGT 262
Query 177 TCTTGCGGTTGGTGCGAATTTCGGAGGAATCACGAGTTTCGTGCTTGGTTTGTCGCC-GG 235
||||||| ||||||||||||||||||||| ||||||||| | || ||||| ||||| ||
Sbjct 263 TCTTGCGATTGGTGCGAATTTCGGAGGAACCACGAGTTTTATACTCGGTTTATCGCCAGG 322
Query 236 AAGTTGGCCGTAATCTGAAACTCGACGTCGTTTATCCGATTGGAGGATATAGCAGATGTA 295
| | ||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 323 GA-TAGGCCGGAATCTAAAACTCGACGTCATTTATCCGATTGGAGGATATAGCAGATGTA 381
Query 296 TCGATACGGTTGAAGGATTCGAATTTATATATCCGGCTACGTGGGTCGGAGACCAGACGC 355
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 382 TCGATACGGTTGAAGGATTCGAATTTATATATCCGGCTACGTGGGTTGGAGACCAGACGC 441
Query 356 TTTTGTATAGAGCGGCGGAGAAATCAGAACGGGAGAATTCGCTAGACCTTCCTCCGGCAA 415
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 442 TTTTGTATAGAGCGGCGGAGAAGTCAGAACGGGAGAATTCGCTAGACCTTCCTCCGGCAA 501
Query 416 GAAACAGTCGTCCG-AAAAATGTTAATGAACCGGTTGTTGCATTTGGACCGCCCGGTTCG 474
|||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 502 GAAACAGTCG-CCGGAAAAACGTTAATGAACCGGTTGTTGCATTTGGACCGCCCGGTTCG 560
Query 475 ACCGGCGAGCTCAATGTCAGTGTTATCGTCTCCCCTGTCTCTCCCAGTTTCTC 527
||||| ||||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 561 ACCGGTGAGCTTAATGTCAGTGTTATCGTTTCCCCTGTCTCACCCAGTTTCTC 613
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25418478382
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5