BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg903388
Length=1422
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05450.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Cystatin-... 484 7e-136
> AT3G05450.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Cystatin-related,
plant (InterPro:IPR006525); BEST Arabidopsis thaliana
protein match is: Cystatin/monellin superfamily protein
(TAIR:AT3G05685.1); Has 2098 Blast hits to 1525 proteins in
202 species: Archae - 2; Bacteria - 561; Metazoa - 485; Fungi
- 302; Plants - 191; Viruses - 20; Other Eukaryotes - 537
(source: NCBI BLink). | chr3:1573909-1576418 REVERSE LENGTH=1323
Length=1323
Score = 484 bits (262), Expect = 7e-136
Identities = 513/627 (82%), Gaps = 46/627 (7%)
Strand=Plus/Plus
Query 496 GAGGGCAAATTACAAACCATATGG-TCGATGACTAAGTTTTACATTACGTTTGCTGCAAG 554
|||||| |||||| |||| ||| || ||| | |||||||||||||| |||||||||||
Sbjct 447 GAGGGCGAATTAC-AACC--CTGGCTCCATGTCCAAGTTTTACATTACATTTGCTGCAAG 503
Query 555 AGAGTCCGAGTCTCCAGATGCACCTTTAGTGGAGTATCAAGCTAAAGCGGTATGGTCTGT 614
|||||| || |||||||||||||||| || ||||||||||||||| || | ||||||||
Sbjct 504 AGAGTCTGATTCTCCAGATGCACCTTCAGAGGAGTATCAAGCTAAGGCCGCATGGTCTGC 563
Query 615 AACCCACAAAATTTATCCCATCCTTTGCAGGCCAA--G--TC--CCG--CAC-CTA-CA- 663
| || | || | |||||||||| |||| || |||| | || | || | | ||
Sbjct 564 AGCCGAGAAGACTTATCCCATCTTTTGTAGACCAAGTGAATCTAAGGTTTACTCAATCAT 623
Query 664 AG-GATGGCTCCCAAATCAAGCGATGGCGAGAGCAATTATGGATCTTCAAGCGCCGGCGA 722
| ||||||||| ||||||||||| || |||| ||| |||||||||||||||| ||||||
Sbjct 624 CGAGATGGCTCCTAAATCAAGCGACGGTGAGACCAAGTATGGATCTTCAAGCGACGGCGA 683
Query 723 TA-CGAAG-GATGGATCTTCGAGC-AAAACCCAATCGACGGAGTCCATGGAAATTTCCAC 779
| | ||| | ||||||||| ||| |||| |||||| |||||||| ||||||||| ||||
Sbjct 684 GATC-AAGTG-TGGATCTTCAAGCGAAAA-CCAATCAACGGAGTCAATGGAAATTACCAC 740
Query 780 GGGCGATGAATCTTCTATGCTGGGGAAGCGCAAGGTTGAAACCACCAACCTGGAGGATCT 839
||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 741 GGGAGATGAATCTTCTATGCTGGGGAAGCGCAAGGTTGAAACCACCGACCTGGAGGATCC 800
Query 840 CAATGAAAACGAAG-GCGACGTAGAAGG-TGTCGATGAGGAGGAGAATAGTGAGAGTGAT 897
| ||||||| || | | || | | | || | || |||||| ||||||| ||||||
Sbjct 801 CGATGAAAATGACGAG-GAGG-ATCCCGATGAAAACGACGAGGAGGATAGTGAAAGTGAT 858
Query 898 AGTGATTCCGAATGGGATAAGGATAGCTTCGATGGTCTG-GAATATCGTTCCTCTGATGA 956
||||||||||||||||||||||||||||||||||| | | || |||| ||||||||||||
Sbjct 859 AGTGATTCCGAATGGGATAAGGATAGCTTCGATGGCC-GAGAGTATCATTCCTCTGATGA 917
Query 957 TCAGA-AGGAGTATATCGAC-AAGGAC-TTGGAGAAGAGGGCCCGTTTTTACAAGCGCAC 1013
||||| || ||||| | || |||||| ||| ||||||||||||||||||||||||||||
Sbjct 918 TCAGAGAG-AGTATGCC-ACCAAGGACCTTG-AGAAGAGGGCCCGTTTTTACAAGCGCAC 974
Query 1014 GGTCATCGAAACCAAAGGtttttttGAGGCAACTGACGAATTCCCACCTTACCTCTGGGC 1073
||||||||||||||| | | ||| || |||||||||||||||||| ||||
Sbjct 975 GGTCATCGAAACCAA-G-T----------CAAGTGCCGAATTCCCACCTTACCTATGGGG 1022
Query 1074 TGGAATTGCTACAGTCCCTGGTCTGGA 1100
||||||||| ||| ||| |||||||||
Sbjct 1023 TGGAATTGCCACACTCCGTGGTCTGGA 1049
Score = 331 bits (179), Expect = 1e-89
Identities = 284/332 (86%), Gaps = 18/332 (5%)
Strand=Plus/Plus
Query 14 CAAGCGA-GAGCGAGACCAAG-GATGGATCTTCAAGCGAAACCCAATCGGCGGAGGCCAT 71
||||||| | |||||| |||| | ||||||||||||||||| |||||| ||||| | ||
Sbjct 671 CAAGCGACG-GCGAGATCAAGTG-TGGATCTTCAAGCGAAAACCAATCAACGGAGTCAAT 728
Query 72 GGAAA-TATCCACGGGCGATGACTCTTCTTTGCTGGGGAAGCGTAAGGTCGAAGCCACCA 130
||||| || ||||||| ||||| |||||| ||||||||||||| ||||| ||| |||||
Sbjct 729 GGAAATTA-CCACGGGAGATGAATCTTCTATGCTGGGGAAGCGCAAGGTTGAAACCACCG 787
Query 131 ACCTGGAGGATCCCGGTGAAAACGAAGAAGGTGTGGACGACGAGGATGTCATA-GATGAG 189
||||||||||||||| |||||| || | | | | ||| | |||| | | || |||
Sbjct 788 ACCTGGAGGATCCCGATGAAAATGACG-A-G-GAGGA--TC-CCGATG-AAAACGACGAG 840
Query 190 GAGGATAAG-GATAGTGATAGTGATCCCGAATGGGATAAGGATAGCTTCGATGGCCGGGA 248
|||||| || || |||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 841 GAGGAT-AGTGAAAGTGATAGTGATTCCGAATGGGATAAGGATAGCTTCGATGGCCGAGA 899
Query 249 GTATCATTCTTCTGATGATGAGAGAGAGTATATCGA-CAAGGACCTTGAGAAGAGGGCCC 307
||||||||| ||||||||| ||||||||||| | | |||||||||||||||||||||||
Sbjct 900 GTATCATTCCTCTGATGATCAGAGAGAGTAT-GCCACCAAGGACCTTGAGAAGAGGGCCC 958
Query 308 GTTTTTACAAGCGCACGGTCATCGAAACCAAG 339
||||||||||||||||||||||||||||||||
Sbjct 959 GTTTTTACAAGCGCACGGTCATCGAAACCAAG 990
Score = 303 bits (164), Expect = 2e-81
Identities = 176/182 (97%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 1186 GGATTCAATGTGAAGTTGGAGCATGTTTTGAGGGCTAATTTCAACCCAGGGGGCAGGACA 1245
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1075 GGATTTAATGTGAAGTTGGATCATGTTTTGAGGGCTAATTTCAACCCAGGGGGCAGGACA 1134
Query 1246 ACATACTACATCACATTTGCTGCAAGAGAGTCTGATTCTCCTGATGCACCTCTAGTGGAG 1305
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 ACGTACTACATCACTTTTGCTGCAAGAGAGTCTGATTCTCCTGATGCACCTCTAGTGGAG 1194
Query 1306 TATCAAGCTAAGGTGGATTGGTCTGCGGGCAATACTTATCCCATCCTTTGCAGACCCACT 1365
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1195 TATCAAGCTAAGGTGGATTGGTCTGCAGGCAAGACTTATCCCATCCTTTGCAGACCCACT 1254
Query 1366 TC 1367
||
Sbjct 1255 TC 1256
Score = 139 bits (75), Expect = 7e-32
Identities = 148/182 (81%), Gaps = 9/182 (5%)
Strand=Plus/Plus
Query 1186 GGATTCAATGTGAAGTTGGAGCATGTTTTGAGGGCTAATTTCAACCCAGGGGGCA-GGAC 1244
||||| |||||||||||||| ||| | |||||||| |||| |||||| || || | |
Sbjct 418 GGATTGAATGTGAAGTTGGAACATATCTTGAGGGCGAATTACAACCCTGGCTCCATGTCC 477
Query 1245 AACATACTACATCACATTTGCTGCAAGAGAGTCTGATTCTCCTGATGCACCT-CTAGTGG 1303
|| | ||||| ||||||||||||||||||||||||||||| ||||||||| | || ||
Sbjct 478 AA-GTTTTACATTACATTTGCTGCAAGAGAGTCTGATTCTCCAGATGCACCTTC-AGAGG 535
Query 1304 AGTATCAAGCTAAGGTGG-ATTGGTCTGCGGGC-A-AT-ACTTATCCCATCCTTTGCAGA 1359
||||||||||||||| | || ||||||| | | | | |||||||||||| |||| |||
Sbjct 536 AGTATCAAGCTAAGGCCGCAT-GGTCTGCAGCCGAGAAGACTTATCCCATCTTTTGTAGA 594
Query 1360 CC 1361
||
Sbjct 595 CC 596
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70079960820
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5