BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg903390 Length=1284 Score E Sequences producing significant alignments: (Bits) Value AT3G05450.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Cystatin-... 311 1e-83 > AT3G05450.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: Cystatin/monellin superfamily protein (TAIR:AT3G05685.1); Has 2098 Blast hits to 1525 proteins in 202 species: Archae - 2; Bacteria - 561; Metazoa - 485; Fungi - 302; Plants - 191; Viruses - 20; Other Eukaryotes - 537 (source: NCBI BLink). | chr3:1573909-1576418 REVERSE LENGTH=1323 Length=1323 Score = 311 bits (168), Expect = 1e-83 Identities = 219/242 (90%), Gaps = 9/242 (4%) Strand=Plus/Plus Query 1033 GGATTTAATGTGAAGTTGGACCATGTTTTGAGGGCTAATTTTGACCCAGGGGGCAGGACA 1092 |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 1075 GGATTTAATGTGAAGTTGGATCATGTTTTGAGGGCTAATTTCAACCCAGGGGGCAGGACA 1134 Query 1093 ACGTACTACATCACATTTGTTGCAAGAGAGTCTGATTCTCCTGATGCACCTCTAGTGGAG 1152 |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1135 ACGTACTACATCACTTTTGCTGCAAGAGAGTCTGATTCTCCTGATGCACCTCTAGTGGAG 1194 Query 1153 TATCAAGCTAAGGTAGTTTGGTCTGCAGGCAAAACTTACCCCATCCTTTGCAGACCCACT 1212 |||||||||||||| | ||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 1195 TATCAAGCTAAGGTGGATTGGTCTGCAGGCAAGACTTATCCCATCCTTTGCAGACCCACT 1254 Query 1213 TCTCCACCTAAAATGG--G---T-GATGGAGGAGATCAATTGAAAGAGGTAGCCGAGGTG 1266 || ||||||| ||| | | |||||||||| |||||||||| ||||| |||||| | Sbjct 1255 TC---ACCTAAATTGGTTGAAGTTGATGGAGGAGCTCAATTGAAAAAGGTATCCGAGGAG 1311 Query 1267 AT 1268 || Sbjct 1312 AT 1313 Score = 158 bits (85), Expect = 2e-37 Identities = 164/199 (82%), Gaps = 18/199 (9%) Strand=Plus/Plus Query 782 CCGAATGGGACAAGGATAGCTTCGATGGCCGGGAATATCATTCCTCTGATGATCAGAGAG 841 |||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 866 CCGAATGGGATAAGGATAGCTTCGATGGCCGAGAGTATCATTCCTCTGATGATCAGAGAG 925 Query 842 AGTATGAGGAC-AAGGACTTTGAGAGGAGGGCCCGTTTTTACC-GTCGCACCGTCATCGA 899 |||||| || |||||| |||||| |||||||||||||||| | ||||| |||||||| Sbjct 926 AGTATGCC-ACCAAGGACCTTGAGAAGAGGGCCCGTTTTTACAAG-CGCACGGTCATCGA 983 Query 900 AACAAAAGGtttttttGAGGCAACTGACGAATTCCTACCTTACCTCTGGGCTGGAATTGC 959 ||| || | | ||| || |||||||| ||||||||| |||| ||||||||| Sbjct 984 AACCAA-G-T----------CAAGTGCCGAATTCCCACCTTACCTATGGGGTGGAATTGC 1031 Query 960 TACAGTCCCG-GGTCTGGA 977 ||| ||| | |||||||| Sbjct 1032 CACACTCC-GTGGTCTGGA 1049 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63152285610 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5