BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg903390

Length=1284
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G05450.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Cystatin-...   311    1e-83


> AT3G05450.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Cystatin-related, 
plant (InterPro:IPR006525); BEST Arabidopsis thaliana 
protein match is: Cystatin/monellin superfamily protein 
(TAIR:AT3G05685.1); Has 2098 Blast hits to 1525 proteins in 
202 species: Archae - 2; Bacteria - 561; Metazoa - 485; Fungi 
- 302; Plants - 191; Viruses - 20; Other Eukaryotes - 537 
(source: NCBI BLink). | chr3:1573909-1576418 REVERSE LENGTH=1323
Length=1323

 Score =  311 bits (168),  Expect = 1e-83
 Identities = 219/242 (90%), Gaps = 9/242 (4%)
 Strand=Plus/Plus

Query  1033  GGATTTAATGTGAAGTTGGACCATGTTTTGAGGGCTAATTTTGACCCAGGGGGCAGGACA  1092
             |||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||
Sbjct  1075  GGATTTAATGTGAAGTTGGATCATGTTTTGAGGGCTAATTTCAACCCAGGGGGCAGGACA  1134

Query  1093  ACGTACTACATCACATTTGTTGCAAGAGAGTCTGATTCTCCTGATGCACCTCTAGTGGAG  1152
             |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  1135  ACGTACTACATCACTTTTGCTGCAAGAGAGTCTGATTCTCCTGATGCACCTCTAGTGGAG  1194

Query  1153  TATCAAGCTAAGGTAGTTTGGTCTGCAGGCAAAACTTACCCCATCCTTTGCAGACCCACT  1212
             |||||||||||||| | ||||||||||||||| ||||| |||||||||||||||||||||
Sbjct  1195  TATCAAGCTAAGGTGGATTGGTCTGCAGGCAAGACTTATCCCATCCTTTGCAGACCCACT  1254

Query  1213  TCTCCACCTAAAATGG--G---T-GATGGAGGAGATCAATTGAAAGAGGTAGCCGAGGTG  1266
             ||   ||||||| |||  |   | |||||||||| |||||||||| ||||| |||||| |
Sbjct  1255  TC---ACCTAAATTGGTTGAAGTTGATGGAGGAGCTCAATTGAAAAAGGTATCCGAGGAG  1311

Query  1267  AT  1268
             ||
Sbjct  1312  AT  1313


 Score =  158 bits (85),  Expect = 2e-37
 Identities = 164/199 (82%), Gaps = 18/199 (9%)
 Strand=Plus/Plus

Query  782   CCGAATGGGACAAGGATAGCTTCGATGGCCGGGAATATCATTCCTCTGATGATCAGAGAG  841
             |||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct  866   CCGAATGGGATAAGGATAGCTTCGATGGCCGAGAGTATCATTCCTCTGATGATCAGAGAG  925

Query  842   AGTATGAGGAC-AAGGACTTTGAGAGGAGGGCCCGTTTTTACC-GTCGCACCGTCATCGA  899
             ||||||   || |||||| |||||| ||||||||||||||||  | ||||| ||||||||
Sbjct  926   AGTATGCC-ACCAAGGACCTTGAGAAGAGGGCCCGTTTTTACAAG-CGCACGGTCATCGA  983

Query  900   AACAAAAGGtttttttGAGGCAACTGACGAATTCCTACCTTACCTCTGGGCTGGAATTGC  959
             ||| || | |          ||| || |||||||| ||||||||| |||| |||||||||
Sbjct  984   AACCAA-G-T----------CAAGTGCCGAATTCCCACCTTACCTATGGGGTGGAATTGC  1031

Query  960   TACAGTCCCG-GGTCTGGA  977
              ||| ||| | ||||||||
Sbjct  1032  CACACTCC-GTGGTCTGGA  1049



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 63152285610


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5