BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg903398

Length=471
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G05540.1 | Symbols:  | Methionine sulfoxide reductase (MSS4-...   558    1e-158


> AT3G05540.1 | Symbols:  | Methionine sulfoxide reductase (MSS4-like) 
family protein | chr3:1606487-1608030 REVERSE LENGTH=507
Length=507

 Score =  558 bits (302),  Expect = 1e-158
 Identities = 342/362 (94%), Gaps = 0/362 (0%)
 Strand=Plus/Plus

Query  110  CGGCTGAAGAAGGCGGTGAAGATGAAGGAGTAGATGATCAAGCTGTGAAGGTTGTTGACA  169
            ||| ||| ||||| |||||||| |||||||| ||||||||||||||||||||||| || |
Sbjct  146  CGGGTGAGGAAGGGGGTGAAGACGAAGGAGTCGATGATCAAGCTGTGAAGGTTGTCGATA  205

Query  170  TCATAGATACGTTTAGGCTTCAGGAGCAACCATCGTTTGACAAGAAACAATTTGTGATGT  229
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  206  TCATCGATACGTTTAGGCTTCAGGAGCAACCATCGTTTGACAAGAAACAATTTGTGATGT  265

Query  230  TCATGAAAAGATACATAAAGCAACTAAGCCCTAAGTTGGACTCGGAAAAGCAAGAGCTGT  289
            | |||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct  266  TTATGAAAAGATACATCAAGCAACTAAGCCCTAAGTTGGACTCAGAAAACCAAGAGCTGT  325

Query  290  TTAAGAAACACATTGAGAGTGCCACTAAGTTCTTGATGTCAAAGCTCAAAGACTTCCAAT  349
            | ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct  326  TCAAGAAACACATTGAGAGTGCCACCAAATTCTTGATGTCAAAGCTCAAAGACTTCCAAT  385

Query  350  TCTTTGTGGGAGAGAGCATGGAAGGAGAAGAAGGGAGCTTAGTGTTTGCTTACTACAGAG  409
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  386  TCTTCGTGGGAGAGAGCATGGAAGGAGAAGAAGGGAGCTTAGTGTTTGCTTACTACAGAG  445

Query  410  AAGGAGCCGCTGATCCTACTTTCCTCTACTTAGCCTACGGCTTGAAGGAGATCAAGTGCT  469
            |||||||| ||||||||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct  446  AAGGAGCCACTGATCCTACTTTTCTCTACTTGGCCTACGGCTTGAAAGAGATCAAGTGCT  505

Query  470  GA  471
            ||
Sbjct  506  GA  507


 Score =  183 bits (99),  Expect = 1e-45
 Identities = 101/102 (99%), Gaps = 0/102 (0%)
 Strand=Plus/Plus

Query  1    ATGTTGGTCTACCAGGATATTCTTACAGGCGATGAGCTTCTCTCTGATTCCTTTCCTTAC  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGTTGGTCTACCAGGATATTCTTACAGGCGATGAGCTTCTCTCTGATTCCTTTCCTTAC  60

Query  61   AAGGAAATCGAGAACGGCATGTTATGGGAAGTTGAAGGAAAG  102
            |||||||||||||| |||||||||||||||||||||||||||
Sbjct  61   AAGGAAATCGAGAATGGCATGTTATGGGAAGTTGAAGGAAAG  102



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22404429562


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5