BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg903400

Length=294
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G05550.1 | Symbols:  | Hypoxia-responsive family protein | c...   472    1e-132


> AT3G05550.1 | Symbols:  | Hypoxia-responsive family protein | 
chr3:1612860-1613748 FORWARD LENGTH=294
Length=294

 Score =  472 bits (255),  Expect = 1e-132
 Identities = 281/294 (96%), Gaps = 0/294 (0%)
 Strand=Plus/Plus

Query  1    ATGGCGGAATCAAAGATCAAATTTGAAGAAATCAGAAAATGGGTCTCCGATCACAAGCTT  60
            |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct  1    ATGGTGGAATCAAAGACCAAATTTGAAGAAATCAGAAAATGGGTCTCCGATCACAAACTT  60

Query  61   CGTACCGTCGGTTGTTTATGGCTCAGTGGTATTACCGGTTCTATCGCCTATAACTGGTCC  120
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  61   CGTACCGTCGGTTGTTTATGGCTAAGTGGTATTACCGGTTCTATCGCCTATAACTGGTCC  120

Query  121  CAACCTGCCATGAAAACCAGTGTCAAGATCATCCACGCCAGGTTGCATGCTCAGGCGCTG  180
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  121  CAACCTGCCATGAAAACCAGTGTCAAGATCATCCACGCCAGGTTGCACGCTCAGGCGCTG  180

Query  181  ACTTTAGCTGCTTTGGCTGGAGCAGCGGTTGTGGAGTATTACGACCACAAAACTGAAGCT  240
            |||||||||||||||||||||||||| || |||||||| || ||||||||||||||||||
Sbjct  181  ACTTTAGCTGCTTTGGCTGGAGCAGCCGTGGTGGAGTACTATGACCACAAAACTGAAGCT  240

Query  241  ACCAACCGCTATCCCAAATTTCTGCCGCCGGAAAATTTGTCTCACAAAGACTAA  294
            |||||||||||||| || |||||||| ||||||||||| |||||||||||||||
Sbjct  241  ACCAACCGCTATCCGAAGTTTCTGCCACCGGAAAATTTATCTCACAAAGACTAA  294



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13572292230


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5