BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg903429
Length=1206
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54300.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 859 0.0
AT3G05770.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 832 0.0
> AT1G54300.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G05770.1);
Has 107 Blast hits to 107 proteins in 18 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses
- 0; Other Eukaryotes - 13 (source: NCBI BLink). | chr1:20270810-20272106
FORWARD LENGTH=1042
Length=1042
Score = 859 bits (465), Expect = 0.0
Identities = 723/838 (86%), Gaps = 55/838 (7%)
Strand=Plus/Plus
Query 163 ATGAATTTCCCAATCTCCATGATCGA-AATTGGAACAT-GGACCCCTGTTG-CAATAAAC 219
||||||||||||||||||| |||| | ||||| || || | | |||| ||| ||||
Sbjct 1 ATGAATTTCCCAATCTCCACGATC-AGGATTGGCGGATGGGTCGTC-GTTGCCAA-AAAC 57
Query 220 CCTGATGATATTGTGGCGAAATTCTATTTTGCTAAGAAAAAACTTATATGGGAGTTTCTC 279
|||||||| |||||||| |||||||||||||| ||||| |||||||||||||||||||||
Sbjct 58 CCTGATGACATTGTGGCCAAATTCTATTTTGCAAAGAAGAAACTTATATGGGAGTTTCTC 117
Query 280 TTTGGAGAACCAGACACTAACATGCCAAGGCTGAAGA-GAAAGATCGAGATTCAATGGAA 338
|| ||||||||||| ||||||| || |||||||| | | ||||||||||||||||||||
Sbjct 118 TTCGGAGAACCAGAGACTAACACGCTGAGGCTGAA-ACGTAAGATCGAGATTCAATGGAA 176
Query 339 TGATATCTCATCTTTTGAAGAGCGTATTTA-TACACGTGATGAAACTGGGATCCTCAAAA 397
|||| ||||||||||||||||| ||| ||| | |||||||||||||||| ||||||||||
Sbjct 177 TGATGTCTCATCTTTTGAAGAGAGTA-TTAGTTCACGTGATGAAACTGGAATCCTCAAAA 235
Query 398 TCGAGTTGAGAAAACGTCCAACATTCTTCATAGAGACTAATCCACAGGCAGGAAAACACA 457
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 TCGAGTTGAAAAAACGTCCAACATTCTTCATAGAGACTAATCCACAGGCAGGAAAACACA 295
Query 458 CTCAATGGAAACAGTTGGAT---GATTTCACCG-ACAATCAGGCTTCTACTTGCAGGAGA 513
||||||||||||| |||||| |||||||||| | | ||| ||||||| || |||||||
Sbjct 296 CTCAATGGAAACAATTGGATCACGATTTCACCGGAGA-TCATGCTTCTAATTACAGGAGA 354
Query 514 CATACAATTCATTTTCCTCCCGGAGTTCTGCAAAAGAACTTGGAGAAGCTTCTGACTGAT 573
|||||| |||||||||||||||||||||||||||||||||||||||||||| | || ||
Sbjct 355 CATACACTTCATTTTCCTCCCGGAGTTCTGCAAAAGAACTTGGAGAAGCTTGTAACCGAC 414
Query 574 AGCTTCTGGTCCAAACTCTAT-AACGTCCCTTTCCCGGTAGAAGAATCTCtttttttCGA 632
||||||||||||||||||||| || ||||||||||||||| | ||||||| || |||||
Sbjct 415 AGCTTCTGGTCCAAACTCTATGAA-GTCCCTTTCCCGGTACATGAATCTCGTTACTTCGA 473
Query 633 TA-TGGGCTTTGAAAACAACAACTCATCTCGCAACAGCCACAACCAGACAGTTAGCTTTA 691
|| ||| ||||||||||||| ||||||||||||||||||| ||| |||||| ||||||
Sbjct 474 TAGTGG-CTTTGAAAACAAC---TCATCTCGCAACAGCCACAGCCACACAGTTGGCTTTA 529
Query 692 ATGTCAACTATGGCCTTCAGCATCATCATTATTCTCAAGGAATTGGTGGCGTGGGAGTGG 751
| |||||| |||||| ||| ||||| | || |||||||||||||||||||||||||||||
Sbjct 530 ACGTCAACAATGGCCCTCAACATCA-C-TT-TTCTCAAGGAATTGGTGGCGTGGGAGTGG 586
Query 752 GAGTGGGAGACAGAAACTTTAACATAGCACCGCAGTTCAGGGCTAACGGTGGATGGCAAA 811
||| || ||||||||| ||| | || ||||||||||||||||||
Sbjct 587 GAGA---AG---GAAACTTTA-----GCA------T---GG-CTAACGGTGGATGGCAAA 625
Query 812 GAAACTCATATAGTCAAGCCAATAGTCTGAATTATAACACTGCTAATGAGTTGCCTCGGA 871
||||||||||||||| || ||||||||||||||||||||||||||||||||| | | |||
Sbjct 626 GAAACTCATATAGTCCAGTCAATAGTCTGAATTATAACACTGCTAATGAGTT-CTTTGGA 684
Query 872 -TGCAAGCTATTATCACACCATCGTATCAGGTGGTTAACGAGCATTATAACATGCAAATG 930
||||||||| | ||||||||| ||| |||||||||||||||||||||| |||||
Sbjct 685 ATGCAAGCTACC--C-CACCATCGTCTCAAGTGGTTAACGAGCATTATAACACGCAAAAC 741
Query 931 GATTTCACCGGTTCACAGTATA-TTAATCAGATGAACCAAGACGAGATCC-GAAAGAT 986
||||||||||||||||||| | ||| ||| ||||||||||||||||||| ||| |||
Sbjct 742 GATTTCACCGGTTCACAGTTTGGTTA-TCACATGAACCAAGACGAGATCCAGAA-GAT 797
> AT3G05770.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G54300.1);
Has 105 Blast hits to 105 proteins in 16 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 99; Viruses
- 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr3:1710013-1712165
REVERSE LENGTH=1548
Length=1548
Score = 832 bits (450), Expect = 0.0
Identities = 639/727 (88%), Gaps = 26/727 (4%)
Strand=Plus/Plus
Query 17 CACGTCTACGCTTGCCTCTAACAAAGGGTCCGGAGCTTATCAATAAAATTGAAAATTACC 76
|||||||| ||||||||||||||| |||||| |||||||| || ||||||| |||||
Sbjct 71 CACGTCTAAACTTGCCTCTAACAAAAACTCCGGAACTTATCAACAAGATTGAAAGTTACC 130
Query 77 TCAATAG-AAACAACACATGTCCTCATCAACAAACAGAGAA-T--TCAAAGACCTCAACT 132
|||| || | || |||||||||||||||||||||||||||| | |||||||| ||||||
Sbjct 131 TCAA-AGTACACTACACATGTCCTCATCAACAAACAGAGAACTCATCAAAGACATCAACT 189
Query 133 TTTCTTAAGAGTTCTGAGAAACTAAAAGCTATGAATTTCCCAATCTCCATGATCGAA-AT 191
||| ||| | |||||||||||||||||||||||||||||||||||| |||| || ||
Sbjct 190 CTTCCCAAGTCTCCTGAGAAACTAAAAGCTATGAATTTCCCAATCTCCACGATC-AAGAT 248
Query 192 TGG-AACATG-GACCCCTGTTG-CAATAAACCCTGATGATATTGTGGCGAAATTCTATTT 248
||| || || | | | |||| ||| |||||||||||| |||||||| |||||||||||
Sbjct 249 TGGCGAC-TGTGTCTTC-GTTGCCAA-AAACCCTGATGACATTGTGGCCAAATTCTATTT 305
Query 249 TGCTAAGAAAAAACTTATATGGGAGTTTCTCTTTGGAGAACCAGACACTAACATGCCAAG 308
||| ||||| |||||| |||||||||||||||| |||||||||| |||||||||| ||
Sbjct 306 TGCAAAGAAGAAACTTTTATGGGAGTTTCTCTTCGGAGAACCAGTGGCTAACATGCCGAG 365
Query 309 GCTGAAGAGAAAGATCGAGATTCAATGGAATGATATCTCATCTTTTGAAGAGCGTATTTA 368
||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||| |
Sbjct 366 GCTGAAGAGTAAGATCGAGATTCAATGGAATGATGTCTCATCTTTTGAAGAGAGTATTAA 425
Query 369 TACACGTGATGAAACTGGGATCCTCAAAATCGAGTTGAGAAAACGTCCAACATTCTTCAT 428
| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 426 TTCACGTGATGAAACTGGAATCCTCAAAATCGAGTTGAAAAAACGTCCAACATTCTTCAC 485
Query 429 AGAGACTAATCCACAGGCAGGAAAACACACTCAATGGAAACAGTTGGA-T--GATTTCAC 485
|||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||
Sbjct 486 AGAGACTAATCCACAGGCAGGAAAACACACTCAATGGAAACAATTGGATTACGATTTCAC 545
Query 486 C-GACAATCAGGCTTC-TACTTGCAGGAGACATACAATTCATTTTCCTCCCGGAGTTCTG 543
| || |||||||||| || || ||||||||||||| |||||||||||||||||||||||
Sbjct 546 CGGA-GATCAGGCTTCTTA-TTACAGGAGACATACACTTCATTTTCCTCCCGGAGTTCTG 603
Query 544 CAAAAGAACTTGGAGAAGCTTCTGACTGATAGCTTCTGGTCCAAACTCTATAACGTCCCT 603
|||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||
Sbjct 604 CAAAAGAACTTGGAGAAGCTTCTGACCGACAGCTTCTGGTCCAAACTCTATAAAGTCCCT 663
Query 604 TTCCCGGTAGAAGAATCTCtttttttCGATATGGGCTTTGAAAACAACAACTCATCTCGC 663
||||||||| | |||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 664 TTCCCGGTACATGAATCTCTTTACTTCGATATTGGCTTTGAAAACAACAACTCATCT--- 720
Query 664 AACAGCCACAACCAGACAGTTAGCTTTAATGTCAACTATGGCCTTCAGCATCATCATTAT 723
||| |||||| | |||||||| |||| || |||||| |||||||||| ||| | | || |
Sbjct 721 AACGGCCACAGCAAGACAGTTGGCTTCAACGTCAACAATGGCCTTCAACATGA-C-TT-T 777
Query 724 TCTCAAG 730
|||||||
Sbjct 778 TCTCAAG 784
Score = 268 bits (145), Expect = 7e-71
Identities = 227/264 (86%), Gaps = 15/264 (6%)
Strand=Plus/Plus
Query 792 GGCTAACGGTGGATGGCAAAGAAACTCATATAGTCAAGCCAATAGTCTGAATTATAACAC 851
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 867 GGCTAACGGTGGATGGCAAAGAAACTCATATAGTCATGTCAATAGTCTGAATTATAACAC 926
Query 852 TGCTAATGAGTTGCCTCGGATGCAAGCTATTATCACACCATCGTATCAGGTGGTTAACGA 911
|| ||||| ||||| | ||||||||||||| | ||||||||| |||||||| ||||||
Sbjct 927 TGATAATGGGTTGCTTGGGATGCAAGCTATC--C-CACCATCGTCTCAGGTGGCTAACGA 983
Query 912 GCATTATAA---CATGCAAATGGATTTCACCGGTTCACAGTATA-TTAATCAGATGAACC 967
||||||||| || ||||| |||| |||||| ||||||| | ||| || ||||||||
Sbjct 984 GCATTATAATAACACGCAAAACGATTACACCGGCTCACAGTTTGGTTA-TCGGATGAACC 1042
Query 968 AAGACGAGATCCGAAAGATGCAAATCATAAGGGA-GATAGCT-GAGAGCCAAGCATATGC 1025
|||||||||||| ||||||||||| ||| |||| |||| || ||||| |||||||||||
Sbjct 1043 AAGACGAGATCCAAAAGATGCAAAGAATA-GGGAAGATA-CTTGAGAGTCAAGCATATGC 1100
Query 1026 TGCAGTACCAGATACACAAACTAA 1049
|||||| ||||||||||||||
Sbjct 1101 ---AGTACCTGATACACAAACTAA 1121
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59236643100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5