BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg903430

Length=537
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G05790.1 | Symbols: LON4 | lon protease 4 | chr3:1720154-172...   291    6e-78


> AT3G05790.1 | Symbols: LON4 | lon protease 4 | chr3:1720154-1725182 
REVERSE LENGTH=2829
Length=2829

 Score =  291 bits (157),  Expect = 6e-78
 Identities = 404/520 (78%), Gaps = 30/520 (6%)
 Strand=Plus/Plus

Query  2     AAAAGTTTAGGGAAAGGATTGAGCCTAAT-AAGCTA-AAAATCCCAAAACGTGTATTGCA  59
             ||||||||||||  |||||||| |||| | |||  | || || |||  || |||| |  |
Sbjct  1049  AAAAGTTTAGGGGGAGGATTGACCCTATTAAAG--ACAAGATTCCAGGACATGTACTAAA  1106

Query  60    AGTTATTGATGAAGAGCTTACGAAATTGGAGGTGTTTA-AGACC-G--GTAACGACTTTA  115
             ||| || || ||||||||||  ||| || || || ||| | ||| |   || |||  || 
Sbjct  1107  AGTCATAGAAGAAGAGCTTAAAAAACTGCAGCTG-TTAGAAACCAGTTCTAGCGA-ATT-  1163

Query  116   CTAT-CG-CCAGTAACTACCTTGAGTGGTTGACCGTATTTCCCTGGGGAAATTACAGTGG  173
             | ||  | |  ||||||||||||| ||||||||||| || || |||||||||| ||||| 
Sbjct  1164  CGATGTGACTTGTAACTACCTTGATTGGTTGACCGTGTTGCCTTGGGGAAATTTCAGTGA  1223

Query  174   TGAGAATTGTGATGTCATGA-GTGCAGAAAAGATTCTTGACGAGGATCATTATGGCTTAT  232
             |||||||| | ||||| | | | ||||||||||||||||||||||||||||| || ||||
Sbjct  1224  TGAGAATTTTAATGTCCT-ACGGGCAGAAAAGATTCTTGACGAGGATCATTACGGATTAT  1282

Query  233   CTAATGTAAAAGAAAGAATAATAGAACACATTGCTGTTGAAAAACTTAGAGGCACTCCTC  292
             || ||||||||||||||||| ||||    |||||||| | |  ||||||||||||| | |
Sbjct  1283  CTGATGTAAAAGAAAGAATACTAGAGTTTATTGCTGTGGGAGGACTTAGAGGCACTTCAC  1342

Query  293   AAGGGAAGATAATTTGTCTAGCGGGTCCTCCCGGGGTTGGTAAGACTAGCATTGCTCGTT  352
             |||||||||| ||||||||  | || ||  | || || ||||| ||||||||||  ||||
Sbjct  1343  AAGGGAAGATCATTTGTCTCTCTGGCCCAACTGGAGTAGGTAAAACTAGCATTGGGCGTT  1402

Query  353   CTATTGCACGTTCTCTTCACCGCAATTTCTTTCAATTCTCTGTTGGAGGGCTAT--GTAC  410
             | ||||||||| ||||| ||||||| ||||| |  |||||||||||||| ||||  | | 
Sbjct  1403  CAATTGCACGTGCTCTTGACCGCAAGTTCTTCCGGTTCTCTGTTGGAGGACTATCCG-AT  1461

Query  411   GGCTGCTAACATTAAGGGG-ATTCCTCGAACATTTTACTA-TGCCACAC-TGGGAAAGAT  467
             |  |||| | ||||||||| || | |||||| | | | |  |||||  | ||| ||||||
Sbjct  1462  GT-TGCTGAGATTAAGGGGCAT-CGTCGAACGTAT-ATTGGTGCCATGCCTGG-AAAGAT  1517

Query  468   GGTGCAATGTCTAAAAATTAAGTGTGGGAACAGAGAAATC  507
             |||||| |||||||| |  |  |||||||||||| |||||
Sbjct  1518  GGTGCAGTGTCTAAAGA--A--TGTGGGAACAGA-AAATC  1552



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25719883264


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5