BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg903441

Length=708
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G48670.1 | Symbols: FEM111, AGL80 | AGAMOUS-like 80 | chr5:1...   119    4e-26


> AT5G48670.1 | Symbols: FEM111, AGL80 | AGAMOUS-like 80 | chr5:19738716-19739841 
REVERSE LENGTH=1126
Length=1126

 Score =  119 bits (64),  Expect = 4e-26
 Identities = 158/202 (78%), Gaps = 11/202 (5%)
 Strand=Plus/Plus

Query  387  ACAATTTCGTCATCCATCATCTCCACAAGTTGGA-TTCTATGAGAAATCTCGGAGTTTGA  445
            |||||||||||||||  |  ||| ||| |||||| ||  ||||| || |||  | | | |
Sbjct  696  ACAATTTCGTCATCCGGCGGCTCAACATGTTGGACTT-AATGAGCAACCTCAAAATCTAA  754

Query  446  ATCTAAATCTAAATGATAATC-ATAATCAGAACCAACAA-AAGTGGTTTATGGAAATGAT  503
            |||| ||| ||||| | || | ||||||| ||  | ||| || |||||||||||||||||
Sbjct  755  ATCTGAATTTAAATCAGAA-CTATAATCA-AA--ATCAAGAA-TGGTTTATGGAAATGAT  809

Query  504  GAACCATCCTGATCAATTGAATTATGCAG-CTGAGCAAAAAGGTTTTCCATTTATGGATG  562
            |||||||||||| ||| |||  ||| ||| | |||||||  || | || ||| |||||||
Sbjct  810  GAACCATCCTGAGCAAATGAGGTAT-CAGACAGAGCAAATGGGATATCAATTCATGGATG  868

Query  563  ATAATCACCACAACAACAACCA  584
            |||| ||||||||| ||| |||
Sbjct  869  ATAACCACCACAACCACATCCA  890



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34309922401


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5