BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg903494
Length=585
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06280.1 | Symbols: | F-box associated ubiquitination effec... 527 5e-149
> AT3G06280.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:1898155-1898751 REVERSE LENGTH=597
Length=597
Score = 527 bits (285), Expect = 5e-149
Identities = 511/613 (83%), Gaps = 44/613 (7%)
Strand=Plus/Plus
Query 1 ATGGagaaacaagaagaagaagaggtgaagagaagaagGACAAGGACAAAAAACAGCAAC 60
||||||||||||||||||||||| ||| | || |||| ||||| |||||||| |||||||
Sbjct 1 ATGGAGAAACAAGAAGAAGAAGATGTG-A-AG-AGAA-GACAAAGACAAAAAGCAGCAAC 56
Query 61 CATCCTCGGGTTCTTACATTGGGATCAGCTCAAGAATCATGGAGATCCATCAAAGGTAGC 120
|| ||||||||||||||||||||| |||| || |||||||||||| ||| ||||||||
Sbjct 57 CAGCCTCGGGTTCTTACATTGGGAAGAGCTAAAAAATCATGGAGATTTATCCAAGGTAGC 116
Query 121 TTTGAACATTACTCTTAC-A--CTCATGGACAATGCATCAACGGGGTTCTGTATTATGAA 177
|||||||||| | ||||| | ||| ||||| ||||||||||||||||||||||||||||
Sbjct 117 TTTGAACATTGCCCTTACTACCCTCGTGGACGATGCATCAACGGGGTTCTGTATTATGAA 176
Query 178 TC-------TTT--TCTTAAAT-A-TGATAGTGCTC-A---TAGCT-TT-A--T---A-G 214
|| ||| || | | | || ||| | | | || || || | | | |
Sbjct 177 TCTGGTGAATTTGATCGT-GCTCAGGGAAAGTTCCCAAGGTTACCTCTTAACTTACGAGG 235
Query 215 GAAAGTTAGCTTCTCTTGTTTACT-CAACCAATATGGATGCCTTTATTTCACTATGGGTT 273
|||||||||||||||||| || || ||||| || || | |||||||||||||||||||||
Sbjct 236 GAAAGTTAGCTTCTCTTGCTT-CTGCAACCTATGTGAAAGCCTTTATTTCACTATGGGTT 294
Query 274 TTGGAAGATGCAGAGAGCCATGAGTGGTCGTTTAGAATATTTTCTTTACCTTTTCCTCTA 333
|||| ||||||||||| |||| |||||||||||||| |||||||||| ||||||| ||
Sbjct 295 CTGGAGGATGCAGAGAGACATGCGTGGTCGTTTAGAACATTTTCTTTAACTTTTCCACTC 354
Query 334 GATGATCCAATTTCGCACACCCTTTTA-ATACTAACGGGTGTGACTGAAGCCGGTGAGTT 392
||||||||||||| | ||||| ||||| | ||||||||||||||||||||||||||||||
Sbjct 355 GATGATCCAATTTTGGACACCTTTTTAGA-ACTAACGGGTGTGACTGAAGCCGGTGAGTT 413
Query 393 TGTTTACGCACCAACAACTCTGGAGAATCCGTTTCATGCTCTGTATTTCGATCCACAGCG 452
||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||| |
Sbjct 414 TGTTTACGCACCAACAACTTTGCAGAGTCCGTTTCATGCTCTGTATTTCGATCCACAGAG 473
Query 453 AAACAGCTTTAGAAGAGTCATATATGAAGGAATTGCGGACAACGAATTTAGGCGACGCAA 512
||||||||||||||||||||||||||||||| | |||||| |||||||||||||||| ||
Sbjct 474 AAACAGCTTTAGAAGAGTCATATATGAAGGACTCGCGGACGACGAATTTAGGCGACGTAA 533
Query 513 TGGACTTGGAAACAAACCTCTCCGTAGGCTACATATATTTCCCAATCACGTAGGGAGTCT 572
| |||||||| || ||| || || | || | | || ||||||||| ||| ||||||
Sbjct 534 TAGACTTGGATACGAACGTCACC--A---TA--T-TCTT-CCCAATCACATAGAGAGTCT 584
Query 573 TATGTCTTTCTAA 585
|| ||||| |||
Sbjct 585 CATTTCTTTGTAA 597
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28131122320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5