BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg903545

Length=306
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G52440.1 | Symbols: HCF106 | Bacterial sec-independent trans...   196    8e-50


> AT5G52440.1 | Symbols: HCF106 | Bacterial sec-independent translocation 
protein mttA/Hcf106 | chr5:21286760-21288904 FORWARD 
LENGTH=1210
Length=1210

 Score =  196 bits (106),  Expect = 8e-50
 Identities = 134/147 (91%), Gaps = 4/147 (3%)
 Strand=Plus/Plus

Query  73   TCTC-CC-AAATCTTCAAACCCAGAGAAGAAGAGAAGATGTAAGTGTACGATGAATTT-T  129
            |||| || |||||||||||||||||||||||||||||||||||| ||| ||||| ||  |
Sbjct  327  TCTCGCCGAAATCTTCAAACCCAGAGAAGAAGAGAAGATGTAAGAGTATGATGA-TTCGT  385

Query  130  GCGTCTTTGTTTGCTGTTGGAGCACCTGAGGCTTTAGTTATTGGTGTTGTCGCTTTGTTA  189
            |||||| |||||| ||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct  386  GCGTCTCTGTTTGGTGTTGGAGCACCTGAGGCTTTGGTTATTGGTGTTGTTGCTTTGTTA  445

Query  190  GTCTTTGGTCCTAAAGGCCTTGATGAG  216
            ||||||||||||||||| |||| ||||
Sbjct  446  GTCTTTGGTCCTAAAGGTCTTGCTGAG  472



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14175505218


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5