BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg903586

Length=210
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G06962.1 | Symbols:  | other RNA | chr3:2197123-2197332 FORW...   350    4e-96


> AT3G06962.1 | Symbols:  | other RNA | chr3:2197123-2197332 FORWARD 
LENGTH=210
Length=210

 Score =  350 bits (189),  Expect = 4e-96
 Identities = 203/210 (97%), Gaps = 0/210 (0%)
 Strand=Plus/Plus

Query  1    ATGGGAGGTTCTTGGCGTTTCTTCTTTAGCTTCTTTGGCAGTTTCAAAGCATGGTGGCGA  60
            ||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct  1    ATGGGAGGTTCGTGGCGTTTCTTCTTTAGCTTCTTCGGCAGTTTCAAAGCGTGGTGGCGA  60

Query  61   CGGAGACAGAGATCGAACCAGGCAGGAACGGACGACGAGATGTATGGTGAAGATAGTGAA  120
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  61   CGGAGACAGAGATCGAACCAGGCAGGAACGGACGATGAGATGTATGGTGAAGATAGTGAA  120

Query  121  GCCAACTTCTATAACTGGTACCTCGTGGAACCAGCTATTAACCGGAGATCCACTGATTTT  180
            |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| 
Sbjct  121  GCCAACTTCTATAATTGGTACCTCGTTGAACCAGCTATTAACCGGAGATCCACTGATTTC  180

Query  181  ATCAAAAGGTTCCACGAGACTCGTGACTGA  210
            ||||||||||||||||||||||||||||||
Sbjct  181  ATCAAAAGGTTCCACGAGACTCGTGACTGA  210



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9406352637


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5