BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg903586 Length=210 Score E Sequences producing significant alignments: (Bits) Value AT3G06962.1 | Symbols: | other RNA | chr3:2197123-2197332 FORW... 350 4e-96 > AT3G06962.1 | Symbols: | other RNA | chr3:2197123-2197332 FORWARD LENGTH=210 Length=210 Score = 350 bits (189), Expect = 4e-96 Identities = 203/210 (97%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 1 ATGGGAGGTTCTTGGCGTTTCTTCTTTAGCTTCTTTGGCAGTTTCAAAGCATGGTGGCGA 60 ||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 1 ATGGGAGGTTCGTGGCGTTTCTTCTTTAGCTTCTTCGGCAGTTTCAAAGCGTGGTGGCGA 60 Query 61 CGGAGACAGAGATCGAACCAGGCAGGAACGGACGACGAGATGTATGGTGAAGATAGTGAA 120 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 61 CGGAGACAGAGATCGAACCAGGCAGGAACGGACGATGAGATGTATGGTGAAGATAGTGAA 120 Query 121 GCCAACTTCTATAACTGGTACCTCGTGGAACCAGCTATTAACCGGAGATCCACTGATTTT 180 |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 121 GCCAACTTCTATAATTGGTACCTCGTTGAACCAGCTATTAACCGGAGATCCACTGATTTC 180 Query 181 ATCAAAAGGTTCCACGAGACTCGTGACTGA 210 |||||||||||||||||||||||||||||| Sbjct 181 ATCAAAAGGTTCCACGAGACTCGTGACTGA 210 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 9406352637 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5