BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg903595
Length=1242
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07030.1 | Symbols: | Alba DNA/RNA-binding protein | chr3:2... 1343 0.0
> AT3G07030.1 | Symbols: | Alba DNA/RNA-binding protein | chr3:2223001-2225254
REVERSE LENGTH=1218
Length=1218
Score = 1343 bits (727), Expect = 0.0
Identities = 1101/1267 (87%), Gaps = 84/1267 (7%)
Strand=Plus/Plus
Query 1 ATGGATAGATACGAGAGAGTCGTTAAACCGAAACCAGAGTCTCCGATTAACGAGAATGAG 60
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATAGATACCAGAGAGTCGCTAAACCGAAACCAGAGTCTCCGATTAACGAGAATGAG 60
Query 61 ATCCGTATCACCAGTAAAGGCCTTATCCGAAACTACATCAGTTATGCCACCACTCTTCTT 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 61 ATCCGTATCACCAGTAAAGGCCTTATCCGAAACTACATCAGTTATGCCACCAGTCTTCTT 120
Query 121 CAGGAGAAAAATGTGAAAGACATTGTGTTGAAGGCAATGGGGCAGGCAATCAGCAAGACG 180
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CAGGAGAAAAGTGTTAAAGACATTGTGTTGAAGGCAATGGGGCAGGCAATCAGCAAGACT 180
Query 181 GTGGCCATCTCTGAGATACTAAAGAATAAAATTCCAGGTTTGCATCAAGACATTGCAATC 240
||||| ||||||||||||||||| |||||||| ||||||||||||||||| |||||||||
Sbjct 181 GTGGCTATCTCTGAGATACTAAAAAATAAAATCCCAGGTTTGCATCAAGATATTGCAATC 240
Query 241 AGTTCTATTAGCATTACTGATGTCTGGGAGCCTACTGAGGAGGGTCTT-TTTCCGGTGGA 299
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 241 AGTTCTATTAGCATTACTGATGTCTGGGAGCCTACTGAGGAGGGT-TTGTTTCCGGTGGA 299
Query 300 GTTGACTCGCCATGTTTCCATGATTTCAATCACATTGTCATTGA-CTGAGCTAAATAAAG 358
|||||| ||||||||||||||||||||||||||||||||||||| | |||||||| ||||
Sbjct 300 GTTGACGCGCCATGTTTCCATGATTTCAATCACATTGTCATTGAGC-GAGCTAAACAAAG 358
Query 359 ATTCTCCTGGGTATCAAGCTCCATCCCAAACAGATCAGTCTAAGCCTCAATATCAGCCAC 418
||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||
Sbjct 359 ATTCTCCTGGGTATCAAGCTCCAGCACAGTCAGATCAGTCTAAGCCTCAATATCAGCCAC 418
Query 419 AACAAGGGAGACAAGCCCGCCTGCCATACAATGCTTATGGTGAAGATTCTTATGGTCGAG 478
|||||||||||||||||||||| ||||||||||||||||||||||| || |||
Sbjct 419 AACAAGGGAGACAAGCCCGCCTACCATACAATGCTTATGGTGAAGA-------GG--GAG 469
Query 479 GGAGAGGTCGTGGCAGAGGGAGAGGCAGGGGAAGAGGTGGATATGGAAACTACCAAGGGG 538
|| | |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 470 --AG-G-TCGTGGCAGAGGGAGAAGCAGGGGAAGAGGTGGATATGGAAACTACCAAGGGA 525
Query 539 GTTATGAAGGAAAAGACCAAGGGAACTATCAAGAAGATTATCAAGGTA-TGTTATGCCAT 597
||||||||||||||||||||||||||||||||||||||||||||| | || | | |
Sbjct 526 GTTATGAAGGAAAAGACCAAGGGAACTATCAAGAAGATTATCAAGACAATGA-AGG---T 581
Query 598 CGAAGAAGTTCATTCT-GTTTCCTCTTTATTTTGGCCGTGGACGTGGTGGACGAAGCCAT 656
| | | |||| || | | | |||||||||||||||||||||||| ||
Sbjct 582 GG--GTA-TTCAAACTCGGG-CAG----A----GGCCGTGGACGTGGTGGACGAAGCTAT 629
Query 657 GGCCATCGTGGTACTGGATATCAGGGTGGCAGAGGCGGGTATGGTGGTAGGAGAGATGGC 716
||| ||||||| | | || ||||||||||||||||||| ||||||||||
Sbjct 630 GGCTATCGTGG----G--T----GG----CAGAGGCGGGTATGGTGGTGGGAGAGATGGT 675
Query 717 GGATATGGTGATGGGAGAGATGACGGATATGGGGGAGGGAGAAACGACAGGTATGGG-A- 774
|||||||||| ||||||||||||||| ||||||| | ||||||| ||| |||||||| |
Sbjct 676 GGATATGGTGGTGGGAGAGATGACGGGTATGGGGAAAGGAGAAATGACGGGTATGGGGAA 735
Query 775 -G-A-AAC-GACGGGTATAGTGGAGGCAGAAACGACGGGTATGGTGGAGGGAGAGATGAT 830
| | || ||| ||||| ||||||| ||| ||||||||||||||||||||||||||||
Sbjct 736 AGGAGAAATGACAGGTATGGTGGAGGAAGAGACGACGGGTATGGTGGAGGGAGAGATGAC 795
Query 831 GGATATGGTGGAGGCAGAAATGATGGGTATGGGGGAAGAAGAGGCGGATTTCGAGGCGGT 890
|||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||
Sbjct 796 GGATATGGTGGAGGCAGAAACGATGGATATGGGGGAAGAAGAGGCGGATTTCGTGGCGGT 855
Query 891 CATGGTGGAGGCAGAGATGAAGGATATGGTGGAGGCCGAGGTGGGTATGGTGGTAGAGGT 950
| |||||||||||||||||||||||| ||||| ||||||||||| ||||| |||||| ||
Sbjct 856 CGTGGTGGAGGCAGAGATGAAGGATACGGTGGCGGCCGAGGTGGATATGGAGGTAGAAGT 915
Query 951 GGAGGCCGAGGTGACGGGTATGGTGGCGGCAGAGGTGATGGGTATGGTGGCGGCAGAGGT 1010
|| |||| |||||| |||||||| || ||||||||||| ||||||||||| |||||||||
Sbjct 916 GGCGGCCAAGGTGATGGGTATGGCGGAGGCAGAGGTGACGGGTATGGTGGAGGCAGAGGT 975
Query 1011 GATGGTTATGGAGGTGGCGGCAGAGGTGATGGTTATGGAGGTGGCCGAGGTGATGGGTAT 1070
|| || ||||| ||| |||||||||||||| ||||| |||||||||| |||| |||||
Sbjct 976 GACGGGTATGG---TGGAGGCAGAGGTGATGGCTATGGTGGTGGCCGAGTTGATAGGTAT 1032
Query 1071 GGTGGCAGCA-GAGGTGATGGTTATGGAGGTGGCCGAG--G-TG---ATGGT-----TA- 1117
| ||| || | || ||||||| ||||| || |||||| | || ||||| ||
Sbjct 1033 GATGG-AGGAAGACGTGATGGCTATGGTGGAGGCCGATATGATGGCTATGGTGGGGGTAA 1091
Query 1118 ---TGA-GG----G-AGG---CCGAGGCGGATACCGCGGAGTTAGAGGTGGATATGGTCG 1165
||| || | ||| ||||||||||||||| |||| |||||| |||||||||||
Sbjct 1092 AAGTGATGGTTATGGAGGTGGCCGAGGCGGATACCGTGGAGGTAGAGGCGGATATGGTCG 1151
Query 1166 TGGACGTGGAAGGATGGGTAATGGTGGTCGTTCAAGGGGTGGGGCTAGTAACCAAAACGA 1225
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 1152 TGGACGTGGAAGGATGGGTAATGGTGGTCGTTCAAGGGATGGTGCTAGTAACCAAAACGA 1211
Query 1226 AGCCTAA 1232
|||||||
Sbjct 1212 AGCCTAA 1218
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61043862720
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5