BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg903601
Length=798
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07090.1 | Symbols: | PPPDE putative thiol peptidase family... 1218 0.0
> AT3G07090.1 | Symbols: | PPPDE putative thiol peptidase family
protein | chr3:2242998-2244820 REVERSE LENGTH=1046
Length=1046
Score = 1218 bits (659), Expect = 0.0
Identities = 754/800 (94%), Gaps = 6/800 (1%)
Strand=Plus/Plus
Query 1 ATGGCTGAGGAAGCGCATAAGGTAACGTTGAATGTCTATGACCTCAGCCAAGGCTTGGCA 60
|||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||
Sbjct 94 ATGGCTGAGGAAGCGCATAAGGTAACATTGAATGTCTATGATTTAAGCCAAGGCTTGGCA 153
Query 61 CGCCAGCTCTCGCAATCACTCTTGGGAAAGGTTATCGAAGGTGTATGGCATACAGGAATA 120
||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 154 CGCCAGCTCTCACAATCACTCCTGGGAAAGGTTATTGAAGGTGTATGGCATACAGGAATA 213
Query 121 GTTGTCTATGGAAATGAGTACTTTTTTGGAGGAGGAATACAGCATTTGCCAGTTGGACGA 180
||||||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||| ||
Sbjct 214 GTTGTCTATGGGAATGAGTACTTTTTTGGAGGAGGGATACAACATTTACCAGTTGGAAGA 273
Query 181 ACTCCATATGGAACACCAATTCGAACGATAGAGTTGGGTCTGTCACATGTTCCTAAAGAT 240
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 274 ACTCCATATGGAACACCAATTCGAACGATAGAGTTGGGTCTATCACATGTGCCTAAAGAT 333
Query 241 GTATTCGAGATGTACTTGGAAGAAATCAGTCCTCGTTACACCGCTGAATCTTACAATTTA 300
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 334 GTATTCGAGATGTACTTGGAAGAAATCAGTCCTCGTTACACTGCTGAATCCTACAATTTA 393
Query 301 CTCACTCACAACTGCAACAACTTCAGCAACGAGGTCGCTCAGTTTTTGGTTGGTAAAGGG 360
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 394 CTTACTCACAACTGCAACAACTTCAGCAACGAGGTCGCTCAGTTTTTGGTGGGTAAAGGG 453
Query 361 ATTCCTGACTACATTCTTCAGCTTCCCAATGATGTTCTAAACAGCCCCATGGGTGGTCTG 420
||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||
Sbjct 454 ATTCCTGACTACATTCTCCAGCTTCCTAATGATGTTCTAAACAGTCCCATGGGTGGTCTT 513
Query 421 ATAATGCCTATGTTACAAGGCCTCGAAACAACTCTAAAAGCTGGTGCTGTTCCTCAAGTT 480
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 514 ATAATGCCTATGTTGCAAGGCCTCGAAACAACTCTAAAGGCTGGTGCTGTTCCTCAAGTT 573
Query 481 CCACAGTTTAGGCCACAGCCACAACCTTTTGGAGCTTTTAGTAAAGATGAAGGTCCAAAA 540
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||
Sbjct 574 CCACAGTTTAGGCCACAGCCACAACCTTTTGGAGCTTTTAGTAAAGATGATGGCCCACAA 633
Query 541 ATTAAGAAAGCCTC-TAAGC-CTGAGGCAGCAGAAACCTCAGCTGCAACGGAGAAAGTGC 598
||| || ||| || ||||| | |||||||||||||||||| ||||||| ||||||||||
Sbjct 634 ATTGTGATAGC-TCCTAAGCTC-GAGGCAGCAGAAACCTCAACTGCAACTGAGAAAGTGC 691
Query 599 CACCTGTTGTTCAACCATCAGCTAGTAAAGAGAAGGTGAAGGAGGACCCGTTGGGTGATG 658
|||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 692 CACCTGTTATTCAACCATCAGCTAGTAAAGAGAAGGTCAAGGACGACCCGTTGGGTGATG 751
Query 659 CTAGGGCCAAGATTCAGGAAGAGATTACAA-CTGAATTTGCAGCTCTCATGGCACAAGGC 717
|||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||
Sbjct 752 CTAGGGCCAAGATTCAGGAAGAGATTACAAGC-GAATTTGCAGCTCTAATGGCACAAGGC 810
Query 718 ACATTACGAGCAAGTGAAGCAGCAGCTATGGCGACTAAAAGAGTCATGCAAAAGTATGGA 777
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||
Sbjct 811 ACATTACGAGCAAGTGAAGCAGCTGCTATGGCGACAAAAAGAGTCATGCAAAAGTACGGA 870
Query 778 CATCTCAATGTAAATGCTTA 797
|||||||||||||| |||||
Sbjct 871 CATCTCAATGTAAACGCTTA 890
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38830995631
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5