BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg903623
Length=1443
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07280.1 | Symbols: | pseudogene of unknown protein | chr3:... 1002 0.0
AT3G07274.1 | Symbols: | unknown pseudogene | chr3:2317939-231... 743 0.0
> AT3G07280.1 | Symbols: | pseudogene of unknown protein | chr3:2318922-2321215
REVERSE LENGTH=2294
Length=2294
Score = 1002 bits (542), Expect = 0.0
Identities = 620/659 (94%), Gaps = 0/659 (0%)
Strand=Plus/Plus
Query 77 aggaaaagcacaaggagaagaagcacaagaaggataaagaaaagaaagaaggaaaggaga 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1634 AGGAAAAGCACAAGGAGAAGAAGCACAAGAAGGATAAAGAAAAGAAAGAAGGAAAAGAGA 1693
Query 137 aaaaggataaagaaaaaagcaaagataaacataaggaacggaaggagaaaaaagagaaac 196
||| ||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 1694 AAAGGGAAAAAGAAAAAAGCAAAGACAAACATAAGGAACGGAAGGAGAGAAAAGAGAAAC 1753
Query 197 ataaagataggaaagacaaagatcgagataaagaaaagagtagaaCTTCGGAGGACaaaa 256
||||||||||||||||||||||||||||||||||||| || |||||||| ||||||| ||
Sbjct 1754 ATAAAGATAGGAAAGACAAAGATCGAGATAAAGAAAAAAGCAGAACTTCAGAGGACAGAA 1813
Query 257 aaaCTGCTGTTGCTTTGCCGAACACCGGGGACAGAGAAAAACTTGTAACAAATACCTTGC 316
|| |||||| || |||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1814 AAGCTGCTGGTGTTTTGTCAAACACCGGGGACAGAGAAAAACTTGTAACAAATACCTTGC 1873
Query 317 AGAATAATGGTAACGGAGAGTCTAAGTTTATACAGGACCTGGCAAGAAGGATCAGAAATG 376
||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1874 AGAGTAATGGTAACGGAGAGTCTAAGTTTATACAGGACCTGGCAAGAAGGTTCGGAAATG 1933
Query 377 AAGAAGCTACAGAAAGTCAAAGTCCACGAAAGATTGATTTTCCTTGTGGAGTTACAGAGA 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1934 AAGAAGCTACAGAAAGTCAAAGTCCACGAAAGATTGATTTTCCTTGTGGAGTTACAGAGA 1993
Query 437 CTAACAATTCCTGCCCAGTTCCTCAAACCAATCATACGAAAGTTGACGAGAAGAGAAACA 496
||||||||||||| || | ||||||||||| | ||| ||||||||||||||||||||||
Sbjct 1994 ATAACAATTCCTGCTCAATACCTCAAACCAACCGTACAAAAGTTGACGAGAAGAGAAACA 2053
Query 497 GTACTCATAAAAACTCTGCTATTTCAAAAGGGTCTGAAAATGCGGTTATCCGAGTATCAT 556
|||| |||| |||||||||||| |||||| |||||||| ||||||| |||||||||||
Sbjct 2054 GTACCCATAGAAACTCTGCTATGTCAAAAAAGTCTGAAAGTGCGGTTCTCCGAGTATCAC 2113
Query 557 CTTGCATGGATCAGAAAGGAGCTGAGGTTAAAGTTAAACCAGTGGAGAAAAATGATCAGG 616
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2114 CTTGCATGGATCAGAAAGGAGCTGAGGTTAAAGTTAAACCAGTGGAGAAAAATGATAAGG 2173
Query 617 CAAGGAAAAGGGAACTACAAGAAAAGAATCACCGCAGGGAAAGTGTGACAAAGAGTGATA 676
||| |||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 2174 CAAAGAAACGGGAACTACAAGAGAAGAATCACCGCAGGGACAGTGTGACAAAGAGTGATA 2233
Query 677 AGCCATTGGATAATGAAGGGATAAGGAAAAGTGAACCAAAAAACATAACAAATGGAAGT 735
||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2234 AGCCATTGGGTAATGAAGGGATAAAGAAAAGTGAACCAAAAAACATAACAAATGGAAGT 2292
Score = 130 bits (70), Expect = 4e-29
Identities = 77/80 (96%), Gaps = 2/80 (3%)
Strand=Plus/Plus
Query 1 ATGTCTCGTTGCTTCCCATTTCCACCTCCAGGATATGACAAGAAGATTAGAACCGAGGCA 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 815 ATGTCTCGTTGCTTCCCATTTCCACCTCCAGGATATGAGAAGAAGATTAGAACCGAGGCA 874
Query 61 TCAGACTCTTT-ACTaaagg 79
||||||||||| | ||||||
Sbjct 875 TCAGACTCTTTGA-TAAAGG 893
> AT3G07274.1 | Symbols: | unknown pseudogene | chr3:2317939-2318454
REVERSE LENGTH=516
Length=516
Score = 743 bits (402), Expect = 0.0
Identities = 464/493 (94%), Gaps = 8/493 (2%)
Strand=Plus/Plus
Query 958 GAGAATGGATCTAGGAAAAACAAGATACATAAGCCAGTTGTTTCTCCTATATCATCCGTG 1017
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 25 GAGAATGGATCTACGAAAAACAAGATACATAAGCCAGTTGTTTCTCCTATATCATCCGTG 84
Query 1018 GAAAACGGAAGAAAGTTTGGAGCATGCCAAACACATCCAAAGCTTGCTTCTGAGTTGCAC 1077
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 85 GAAAACGGAAGAAAGTTTGGAGCATGCCAAACACATCCAAAGCTTGTTTCTGAGTTGCAC 144
Query 1078 GAAGCGGTGTCTAATCCAGAGGTGAAAGAGCACAAGATTAATGGATTCATTTATTCTCAA 1137
||| | ||||||||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct 145 GAAACAGTGTCTAATCCAGAGGTTAAGGAGCACAAGATTAACGGATTCATTTATTCTCAA 204
Query 1138 GAACCCAAAAGCCATCCACCGGTTTCTGCAGTGAAAGTaaaaaaaaaCGATGAAGCATCT 1197
||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||
Sbjct 205 GAACCCAAAAGCCATCCACCGGTTTCTTCAGTGAAAGTTAAAGAAAACGATGAAGCATCT 264
Query 1198 GCAAAGAAGCGGCCTCATTCAGACTT-AAAGTATTTGGATCAGATTTTGAACGTACCAAA 1256
|||||||||||||||||||||||||| ||| ||||||||| |||||||||| ||||||||
Sbjct 265 GCAAAGAAGCGGCCTCATTCAGACTTGAAA-TATTTGGATAAGATTTTGAATGTACCAAA 323
Query 1257 AAGGGAGGAATTGCATGAGGTTGATGATGTTGAACAAGAATGGCTATTTGGTCAGTCAGG 1316
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 324 AAGGGAGGTATTGCATGAGGTTGATGATGTTGAACAAGAATGGCTATTTGGTCAGTCAGG 383
Query 1317 TGAATTATTAAAAAAGCAAAGAGCAGATTCTG---A-T--ACTTCACTGGTTGAGAATCC 1370
| |||||||||||||||||||||||||||||| | | |||||| |||||||||||||
Sbjct 384 TAAATTATTAAAAAAGCAAAGAGCAGATTCTGCTGAATCTACTTCATTGGTTGAGAATCC 443
Query 1371 GCAAGTTTGGAACCAGGCTCTTAGAATAGAATCTGCTGATATTGTAGCTCTTCCCTATGT 1430
||||||||||||||| |||||||| |||||||||||||||||| |||||||||| || ||
Sbjct 444 GCAAGTTTGGAACCAAGCTCTTAGGATAGAATCTGCTGATATTATAGCTCTTCCATACGT 503
Query 1431 TGTTCCATTCTAG 1443
||| |||||||||
Sbjct 504 TGTCCCATTCTAG 516
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71134172265
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5