BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg903629
Length=1371
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07340.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 2012 0.0
> AT3G07340.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr3:2340899-2343470 REVERSE LENGTH=1842
Length=1842
Score = 2012 bits (1089), Expect = 0.0
Identities = 1292/1386 (93%), Gaps = 30/1386 (2%)
Strand=Plus/Plus
Query 1 ATGGAGAACGAGCTGTTTATGAATGCTGGAGCTTCTTCGCATCCGCCGGTGATGACGTCA 60
|||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||
Sbjct 183 ATGGAGAACGAGCTGTTTATGAATGCAGGAG--T-TTCGCATCCGCCGGTGATGACGTCA 239
Query 61 CCGTCTTCTTCGCCGGCGATGCTTAACTGGGTTTCAATGGAGACTCAGCCAGTGGACCCA 120
|||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 240 CCGTCTTCTTCGTCGGCGATGCTTAAGTGGGTTTCAATGGAGACTCAGCCAGTGGATCCA 299
Query 121 AGTCTCGGTTGCAATCTGTTTTGGGAAAAGTCAACGGAACAGAGCATCTTCCATTCGGCT 180
|||||| || ||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 300 AGTCTCAGTCGCAATCTGTTTTGGGAAAAGTCAACGGAACAGAGCATTTTTGATTCGGCT 359
Query 181 CTTAGCTCACTCGTCTCTTCTCCGACGCCGTCCAATTCTAACTTTTC------C------ 228
|| |||||||||||||||||||| |||||||| ||||| |||||||| |
Sbjct 360 CTGAGCTCACTCGTCTCTTCTCCTACGCCGTCAAATTCAAACTTTTCGGTTGGCGGAGTA 419
Query 229 GGTGGAGAAAATGTCGTTATCAGAGAGCTCATCGGGAGATTGAGTAACATCGGCGACATC 288
||||||||||||||| |||| |||||||||||||||| | || |||| |||||||| |||
Sbjct 420 GGTGGAGAAAATGTCATTATGAGAGAGCTCATCGGGAAACTGGGTAATATCGGCGATATC 479
Query 289 TATGGAACTCCGGCGAGCAACGGAAACGTCTCTGGCTCGTGTTACGCAACTCCGATGAGC 348
||||||| | |||||||||| ||||| |||||||||||||||||||||||||
Sbjct 480 TATGGAATTACGGCGAGCAATGGAAA---------CTCGTGTTACGCAACTCCGATGAGC 530
Query 349 TCTCCAACGCCTGGACGTATGATGGTGACGAAAACGACGACGCCGATAACAGAATTTTCC 408
|||||| |||||||| ||||||||| ||||||||||||||||||||| ||||| | |||
Sbjct 531 TCTCCACCGCCTGGAAGTATGATGGAGACGAAAACGACGACGCCGATGGCAGAACTGTCC 590
Query 409 GGCGATCCGGGATTCGCAGAGAGAGCGGCGAGGTTCTCGTGTTTCGGTAGCCGGAGTTTC 468
||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 591 GGCGACCCGGGATTCGCTGAGAGAGCGGCGAGGTTCTCGTGTTTTGGTAGCCGGAGTTTT 650
Query 469 AACGGCAGAACAAACTCGCCGTTTCCGATTAATAACGAACAACCCGTCGCAACCAATGAG 528
||| |||||||||||||||||||||||||||||||||||| |||| || |||||||||||
Sbjct 651 AACAGCAGAACAAACTCGCCGTTTCCGATTAATAACGAACCACCCATCACAACCAATGAG 710
Query 529 AAAATGCCACGTATATCAAGCAGCCCAGTTCTTAAGCCTCTCGTGTCTCATGTTCCCGCC 588
|||||||||||| ||||||||||||||||| |||||||||| | ||||||||||||||||
Sbjct 711 AAAATGCCACGTGTATCAAGCAGCCCAGTTTTTAAGCCTCTTGCGTCTCATGTTCCCGCC 770
Query 589 GGCGAATCGTCCGGTGAA-TATTCCCGGAAAAGAATAGC-AAATTCCAAGCAGAATTCTC 646
|||||||||||||||||| | |||||||||||||| | | ||| ||||||||||||||||
Sbjct 771 GGCGAATCGTCCGGTGAACT-TTCCCGGAAAAGAAAAACTAAA-TCCAAGCAGAATTCTC 828
Query 647 CTTCTACAGTTTCACCATCAAAGGAGATTGAAGAGAAGGAAGATTCTGATCCAAAGAGAT 706
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 829 CTTCTGCAGTTTCATCATCAAAGGAGATTGAAGAGAAGGAAGATTCTGATCCAAAGAGAT 888
Query 707 GCAAAAAATCAGAAGATAATGGAGACAAAACAAAATCAATTGATCCTTACAAAGATTACA 766
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 889 GCAAAAAATCAGAAGAAAATGGAGACAAAACTAAATCAATTGATCCTTACAAAGATTACA 948
Query 767 TTCATGTTAGAGCTCGACGAGGCCAAGCCACCGATAGTCATAGTCTCGCCGAACGAGTTC 826
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 949 TTCATGTTAGAGCTCGACGAGGCCAAGCCACCGATAGTCACAGTCTCGCCGAACGAGTTC 1008
Query 827 GAAGAGAGAAAATAAGCGAAAGAATGAAGCTGCTTCAAGATCTTGTCCCTGGTTGCAACA 886
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1009 GAAGAGAGAAAATAAGCGAAAGAATGAAGCTGCTTCAAGATCTTGTCCCTGGATGCAACA 1068
Query 887 AGGTTACTGGAAAAGCACTGATGTTGGATGAAATTATAAACTATGTCCAATCATTGCAAC 946
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 AGGTTACTGGAAAAGCACTGATGTTGGATGAAATTATAAACTATGTCCAATCATTGCAAC 1128
Query 947 GACAAGTTGAGTTCTTGTCGATGAAGTTATCGTCGGTGAACACCAGGCTGGACTTTAACA 1006
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1129 GACAAGTTGAGTTCTTGTCGATGAAGTTATCGTCAGTGAACACCAGGCTGGACTTTAACA 1188
Query 1007 TGGACGCTCTCTTGTCTAAGGATATATTTCCTTCAAGCAACAATCTAATGCATCATCAAC 1066
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1189 TGGACGCTCTCTTGTCTAAGGATATATTTCCTTCAAGCAACAATCTAATGCATCATCAAC 1248
Query 1067 AAGTACTTCAATTAGATTCTTCAGCAGAAACGTTATTGGGTGATCATCACAATAATAATT 1126
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1249 AAGTACTTCAATTAGATTCTTCAGCAGAAACGTTATTGGGTGATCATCACAACAAAAATT 1308
Query 1127 TGCGGCTGAACCCTGATATTTCTTCTAATAACATAATAAACCCTTTGGAAACTTCTGAAA 1186
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1309 TGCAATTGAACCCTGATATTTCTTCTAATAACGTAATAAACCCTTTGGAAACTTCTGAAA 1368
Query 1187 CTAGAAGCTTCATTTCTCACTTACCAACACTTGCCCATTTCACTGACTCTATTTCTCAGT 1246
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1369 CTAGAAGCTTCATTTCTCACTTACCAACACTTGCTCATTTCACTGACTCTATTTCTCAGT 1428
Query 1247 ATTCAACATTTTCCGAAGATGATTTA-ACTAGCATTATTCAAATGGGTTTTGCGCAAAAC 1305
|||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||
Sbjct 1429 ATTCAACATTTTCCGAAGATGATTTACA-TAGCATTATTCATATGGGTTTTGCGCAAAAC 1487
Query 1306 CGGCTCCACGAATTAAACCATGGTTCATCAAACCAAGTACCGTCGCACATGAAAGCTGAA 1365
|| ||||| ||||| ||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1488 CGTCTCCAAGAATTGAACCAAGGTTCATCAAACCAAGTACCATCGCACATGAAAGCTGAA 1547
Query 1366 CTTTGA 1371
||||||
Sbjct 1548 CTTTGA 1553
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67519733025
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5