BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg903655
Length=1404
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07570.1 | Symbols: | Cytochrome b561/ferric reductase tran... 1712 0.0
AT3G07568.1 | Symbols: | unknown protein; Has 9 Blast hits to ... 351 8e-96
> AT3G07570.1 | Symbols: | Cytochrome b561/ferric reductase transmembrane
with DOMON related domain | chr3:2418049-2420296
REVERSE LENGTH=1356
Length=1356
Score = 1712 bits (927), Expect = 0.0
Identities = 1050/1110 (95%), Gaps = 5/1110 (0%)
Strand=Plus/Plus
Query 1 ATGAAGCTTTATTCTGTTTCCTTGGTCATCTTCGTCTTAATTGCT-TACTCCACCATAGT 59
||||||||||||||||||||| | |||||||||||||||||||| | ||||||||||
Sbjct 91 ATGAAGCTTTATTCTGTTTCCATCATCATCTTCGTCTTAATTGCTCT-CTCCACCATA-- 147
Query 60 TGTTAATGCACAACAAGCTGCTAGAGATTCCTGCAATTCAACACTACCTCTCAACAACCT 119
|||||||| ||||||||||||| |||||||||||| ||||| |||||||||||| ||||
Sbjct 148 -GTTAATGCTCAACAAGCTGCTACAGATTCCTGCAACTCAACTCTACCTCTCAACGACCT 206
Query 120 CACCTTTAACGTCAGCCTCCTTCAATGCACAGAAGCTTGGAGTCTCCAAAATTACATCCT 179
|||||| ||| |||||||||||||||||| |||||||||| || |||||||| ||||||
Sbjct 207 CACCTTCAACACCAGCCTCCTTCAATGCACCGAAGCTTGGACTCCCCAAAATTTCATCCT 266
Query 180 CCGATATGCAAGAACGGTAGACAACACATGGAGCTTTATCTTATCGGCGCCGGATTCAAG 239
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 267 CCGATATGCAAGAACGGCAGAGAACACATGGAGCTTTATCTTATCGGCGCCGGATTCAAG 326
Query 240 CGCTTTCATCGGGATCGGATTCTCAACCAACGGTCAGATGATCGGAAGCAGCGCGATCGT 299
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 327 CGCTTTCATCGGGATCGGATTCTCTACCAACGGTCAGATGATCGGAAGCAGCGCGATCGT 386
Query 300 CGGTTGGATACCTTCCGACGGCGGTTCCGGGACTGTCAAACCGTACTTGCTTGGAGGGAA 359
||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||
Sbjct 387 TGGTTGGATACCTTCCGACGGCGGTTCCGGGACTGTGAAACCGTACTTGCTCGGTGGGAA 446
Query 360 ATCTCCCGGCGAGGTGAATCCTGACCAAGGAGATCTAACCATCGTCAACGGCTCGTTGAA 419
||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 447 ATCTCCCGGAGAGGTTAATCCTGACCAAGGAGATCTAACGATCGTCAACGGCTCGTTGAA 506
Query 420 GATCGAATCAGTGTCGTCGCGTCTTTACATGAGTTTTCAACTGACGGCGACGCTGCCGCG 479
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 507 GATCGAATCAGTGTCGTCGCGTCTTTACATGAGATTTCAATTGACGGCGACGCTGCCGCG 566
Query 480 ACAGAGTCTTCTTTACGCTCTGGGACCTGCCGGCTTCTTCCCATCTTCGCCGGATTTTAG 539
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 567 GCAGAGTCTTCTTTACGCTGTGGGACCTGCCGGATTCTTCCCATCTTCGCCGGATTTTAG 626
Query 540 ATTGAGAGAGCACCGCTTCGTGACCACCACGACCATCAATTATATTACAGGTTCGCAAAG 599
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 627 GTTGAGAGAGCACCGCTTCGTGACCACCACGACCATCAATTATAATACAGGTTCGCAAAG 686
Query 600 TGTGGTTAAAGGTTCACCACACTCTAAGCTAAAGAAGACACATGGGCTAATGAACATGTT 659
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 687 TGTGGTTAAAGTTTCACCACACTCTAAGCTAAAGAAGACACATGGGCTAATGAACATGTT 746
Query 660 CGGCTGGGGAATATTGATTATCATTGGAGCCATAGTGGCTCGACACATGAAGCAGTGGGA 719
|||||||||||||||||||||| |||| ||||||||||||||||| |||||||| |||||
Sbjct 747 CGGCTGGGGAATATTGATTATCGTTGGCGCCATAGTGGCTCGACATATGAAGCAATGGGA 806
Query 720 CCCCACTTGGTTCTATGCCCATATCGCTCTCCAAACCACTGGTTTTCTTCTCGGTTTAAC 779
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 807 CCCCACTTGGTTCTATGCCCATATCGCTCTCCAAACCACTGGTTTTCTCCTCGGTTTAAC 866
Query 780 TGGTGTCATTTGCGGTTTGGTTCTTGAAAACAGGCTCAAGGCCAATAATGTTTCCAAGCA 839
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 867 TGGTGTCATTTGCGGTTTGGTTCTTGAAAACCGGCTCAAGGCCAATAATGTTTCCAAGCA 926
Query 840 CAAAGGCCTTGGGATAACCATACTTGTCAAGGGCGTTCTCCAGATGCTTGCATTGCTAGC 899
||||||||| ||||||||||||||||||| ||||||||| |||||||| |||||||||||
Sbjct 927 CAAAGGCCTCGGGATAACCATACTTGTCATGGGCGTTCTTCAGATGCTGGCATTGCTAGC 986
Query 900 TCGGCCGGATAAGCAATCGAAATACAGAAAATATTGGAATTGGTATCATCATAACATAGG 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 987 TCGGCCGGATAAGCAATCGAAATACAGAAAATATTGGAATTGGTATCATCATAACATAGG 1046
Query 960 AAGAATTATGATCATACTCGCTATTTCTAACATCTTCTACGGTATACATTTGGCTAAAGC 1019
|||| || |||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1047 AAGACTTCTGATCATACTGGCTATTTCTAACATCTTCTACGGTATTCATTTGGCTAAAGC 1106
Query 1020 TGGTTCTAGTTGGAATGGCGGTTACGGTTTTGCAGTCGCGGTATTGGCCTTGGCAGCTAT 1079
||| ||||||||||||| |||||||||||||| |||||||| ||||||||| | |||||
Sbjct 1107 TGGAACTAGTTGGAATGGTGGTTACGGTTTTGCGGTCGCGGTCTTGGCCTTGACGGCTAT 1166
Query 1080 TGGATTagaagttagaaagttattgaaaaa 1109
||||||||||||||||||||| ||||||||
Sbjct 1167 TGGATTAGAAGTTAGAAAGTTCTTGAAAAA 1196
> AT3G07568.1 | Symbols: | unknown protein; Has 9 Blast hits to
9 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr3:2416243-2417790 REVERSE LENGTH=496
Length=496
Score = 351 bits (190), Expect = 8e-96
Identities = 210/219 (96%), Gaps = 4/219 (2%)
Strand=Plus/Plus
Query 1135 gaagaagaagaagaaagagagaTGTTGAGAACTCGCCTTCTCTGGTTTACGCTTGGGTTT 1194
||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 20 GAAGAAGAAGAAG-AA-AGAGATGTTGAGAACTCGCCTTCTCTGGTTTACGCTTGGTTTT 77
Query 1195 TCCGTGACCGGAGCTTCCATTTG-TCATATCGTGTGGCGTGATCTCTATGCCGAACGTTT 1253
||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 78 TCCGTGACCGGAGGTTCCA-TTGCTCATATCGTGTGGCGTGATCTCTATGCCGAACGTTT 136
Query 1254 CGCTATTTCTTCTGATATAAAGGAGAAATTCAATGCTCTGGAAGGTAGAGTATCAGGTCT 1313
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
Sbjct 137 CGCTATTTCTTCTGATATGAAGGAGAAATTCAGTGCTCTGGAAGGTAGAGTATCAGGTTT 196
Query 1314 GGAGTCTGGTGGTTATGAGAACCCGAATCCAGCTCAGGT 1352
|||||||||||||||||||||||||||||||||||||||
Sbjct 197 GGAGTCTGGTGGTTATGAGAACCCGAATCCAGCTCAGGT 235
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69176351010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5