BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg903657

Length=309
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G07590.1 | Symbols:  | Small nuclear ribonucleoprotein famil...   486    4e-137


> AT3G07590.1 | Symbols:  | Small nuclear ribonucleoprotein family 
protein | chr3:2423085-2424166 FORWARD LENGTH=614
Length=614

 Score =  486 bits (263),  Expect = 4e-137
 Identities = 281/289 (97%), Gaps = 3/289 (1%)
 Strand=Plus/Plus

Query  1    ATGAAGCTCGTCAGGTTTTTGATGAAGTTAAACAATGAAACTGTGTCAATCGAGCTGAAG  60
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  62   ATGAAGCTCGTCAGGTTTTTGATGAAGTTAAACAATGAAACTGTGTCTATCGAGCTGAAG  121

Query  61   AATGGGACTGTGGTCCATGGAACCATCACTGGTGTTGATGTGAGCATGAACACTCACTTG  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  122  AATGGGACTGTGGTCCATGGAACCATCACTGGTGTTGATGTGAGCATGAACACTCACTTG  181

Query  121  AAGACAGTGAAAATGAGCCTCAAGGGGAAAAACCCAGTAACTA-TTGATCATCTTAGCTT  179
            ||||||||||| |||||||| |||||||||||||||||||| | ||||||||||||||||
Sbjct  182  AAGACAGTGAAGATGAGCCTGAAGGGGAAAAACCCAGTAAC-ACTTGATCATCTTAGCTT  240

Query  180  GAGGGGTAACAATATCCGCTACTACATTCTTCCTGATAGCTTGAACCTCGAGACTTTACT  239
            ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  GAGGGGTAATAATATTCGCTACTACATTCTTCCTGATAGCTTGAACCTCGAGACTTTACT  300

Query  240  TGTGGAAGACACTCCTAGAGTTAAACCTAAGAAGCCTGTTGCTGGAGAA  288
            ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  301  TGTGGAAGACACTCCTAGAGTTAAACCTAAGAAGCCTGTTGCTGG-GAA  348



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14326308465


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5