BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg903661
Length=1146
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07630.1 | Symbols: ADT2 | arogenate dehydratase 2 | chr3:24... 1857 0.0
> AT3G07630.1 | Symbols: ADT2 | arogenate dehydratase 2 | chr3:2435445-2437965
FORWARD LENGTH=1518
Length=1518
Score = 1857 bits (1005), Expect = 0.0
Identities = 1100/1147 (96%), Gaps = 2/1147 (0%)
Strand=Plus/Plus
Query 1 ATGGCAATGAACGCTGTTCGATTGTCGCCGGCGACTCAGCTTCACGGCGGAATCTCTAGC 60
||||||||| || ||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 13 ATGGCAATGCACACTGTTCGATTGTCGCCGGCGACTCAACTTCACGGCGGTATCTCTAGC 72
Query 61 AATCTGTCACCATCCAATCGCAAACCTAATAATCCCATCTTCCGATACGGATGCGGATCT 120
|||||||||||| ||||||| |||||||||||| ||||| ||||||||||||||||||||
Sbjct 73 AATCTGTCACCACCCAATCGAAAACCTAATAATTCCATCGTCCGATACGGATGCGGATCT 132
Query 121 TCGAACCGTTTCCGTATGGTAACCGTATTGGCGTCACTCCGGGAAAATGATGCAAATGGT 180
||||| ||||||||||| ||||| || |||||||||||||||||||| |||||||| ||
Sbjct 133 TCGAAGCGTTTCCGTATCGTAACGGTCTTGGCGTCACTCCGGGAAAACGATGCAAACGGA 192
Query 181 AGGGATAACTCCGTGAGAGCTATGGAAGTGAAGAAGATTC-TTGAAGACTCGCCTCTGCT 239
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 193 AGGGATAACTCCGTGAGAGCTATGGAAGTGAAGAAGA-TCTTTGAAGACTCGCCTCTGCT 251
Query 240 TCCTAAGCCGTTATCATCAAACCAGCTCGCGGAATCTGTCTCTAATGGCTCCCGCGTTCG 299
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 252 TCCTAAGCCGTTATCATCGAACCAGCTCACGGAATCTGTCTCTAATGGCTCCCGCGTTCG 311
Query 300 TGTTGCGTATCAGGGAGTACGTGGTGCATACAGCGAATCAGCTGCTGAGAAGGCTTATCC 359
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 312 TGTTGCGTATCAGGGAGTACGAGGTGCATACAGCGAATCAGCTGCTGAGAAGGCTTATCC 371
Query 360 AAACTGTGAAGCTGTTCCATGCGAAGAGTTTGACACTGCCTTTGAGGCCGTTGAGAGGTG 419
||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||
Sbjct 372 AAACTGTGAAGCTGTTCCATGCGAAGAGTTTGACACTGCTTTTGAGGCGGTTGAGCGGTG 431
Query 420 GCTTGTTGACCGAGCTGTTTTACCAATTGAGAACTCTTTAGGTGGAAGCATCCATAGAAA 479
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 432 GCTTGTTGACAGAGCTGTTTTACCGATTGAGAACTCTTTAGGTGGAAGCATCCATAGAAA 491
Query 480 TTATGATCTTCTGCTGCGACACAATTTGCATATTGTAGGCGAAGTCAAGCTAGCTGTTCG 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 492 TTATGATCTTCTGCTGCGACACAATTTGCATATTGTAGGCGAAGTCAAGCTAGCTGTTCG 551
Query 540 CCACTGTTTGCTGGCTAACCACGGTGTAAATATTGAAGATTTGAGAAGGGTGCTTAGCCA 599
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 552 GCACTGTTTGTTGGCTAACCACGGTGTAAATATTGAAGATTTGAGAAGGGTGCTTAGCCA 611
Query 600 TCCACAGGCTCTTGCCCAATGTGAAAACACGTTAACTAAATTGGGATTGGTCAGAGAAGC 659
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 612 TCCACAGGCTCTTGCCCAATGTGAAAACACGTTAACCAAATTGGGGTTGGTCAGAGAAGC 671
Query 660 AGTAGATGACACTGCTGGCGCTGCCAAGCAAATTGCAATCGAAAATTTAAGTGATGCAGC 719
||||||||| |||||||||||||| |||||||||||| |||||||||||| |||||||||
Sbjct 672 AGTAGATGATACTGCTGGCGCTGCGAAGCAAATTGCATTCGAAAATTTAAATGATGCAGC 731
Query 720 AGCAGTTGCCAGTGCAGAAGCTGCAGAGATATATGGTTTGAACATAGTTGCTGAAGATAT 779
||||||||||||| | |||||||| |||||||||||||||||||||| ||| |||||||
Sbjct 732 TGCAGTTGCCAGTGAAAAAGCTGCAAAGATATATGGTTTGAACATAGTCGCTAAAGATAT 791
Query 780 CCAGGATGACTGTGATAATGTTACAAGGTTTCTAATGCTCGCAAGGGAACCCATTATCCC 839
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 792 CCAGGATGACTGTGATAATGTTACAAGGTTTCTAATGCTCGCAAGAGAACCCATTATCCC 851
Query 840 TGGAACTAACAGACTCTTTAAGACAAGTATAGTTTTCTCGTTAGAGGAAGGACCTGGAGT 899
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 852 TGGAACTAACAGACTCTTTAAGACAAGTATAGTTTTCTCGTTAGAGGAAGGGCCTGGAGT 911
Query 900 ACTTTTCAAAGCACTTGCTGTGTTTGCCCTTAGGCAAATCAACCTCACAAAGATTGAAAG 959
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 912 ACTTTTCAAAGCGCTTGCTGTGTTTGCCCTTCGGCAAATCAACCTCACAAAGATTGAAAG 971
Query 960 CCGCCCTTTAAGGAAACATCCTCTCCGAGCATCTGGAGGACTAAAATACTTTGATTATCT 1019
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 972 CCGCCCTTTAAGGAAACATCCTCTCCGAGCATCTGGAGGACTAAAATACTTTGACTATCT 1031
Query 1020 TTTCTATGTGGACTTTGAAGCATCTATGGCTGATGAAGTTGCTCAGAACGCACTTAGGCA 1079
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1032 TTTCTATGTGGACTTTGAAGCATCTATGGCTGATGAAGTTGCTCAAAACGCACTTAGGCA 1091
Query 1080 TCTCGAGGAATTTGCTACCTTCTTGCGGGTACTGGGAAGCTACCCAGTGGACACTACAAT 1139
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1092 TCTCGAGGAGTTTGCTACCTTTTTGCGGGTACTGGGAAGCTACCCAGTGGACACTACAAT 1151
Query 1140 GCTCTAA 1146
|||||||
Sbjct 1152 GCTCTAA 1158
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56224610400
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5