BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg903668
Length=1380
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07690.1 | Symbols: | 6-phosphogluconate dehydrogenase fami... 1426 0.0
> AT3G07690.1 | Symbols: | 6-phosphogluconate dehydrogenase family
protein | chr3:2457108-2459552 FORWARD LENGTH=1699
Length=1699
Score = 1426 bits (772), Expect = 0.0
Identities = 819/842 (97%), Gaps = 2/842 (0%)
Strand=Plus/Plus
Query 25 GTGGAGACGAATTCAGCTCCGAGCAGATTGGTGGAAGAAAGGCTTGATGAGATTCGTAGA 84
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 140 GTGGAGACGAATTCAGTTCCGAGCAGATTGGTGGAAGAAAGGCTTGATGAGATTCGTAGA 199
Query 85 GTAATGGGCAAAGCTGATGATGATCCATTAAGGATCGTTGGTGTAGGAGCTGGTGCTTGG 144
|||||||| ||||||||||| || || |||||||||||||||||||||||||||||||||
Sbjct 200 GTAATGGGTAAAGCTGATGACGACCCGTTAAGGATCGTTGGTGTAGGAGCTGGTGCTTGG 259
Query 145 GGAAGCGTTTTCATTGCAATGTTGCAGGAAAACTACGGCAAGTTTAGGGCCAAAGTTAGT 204
|||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||
Sbjct 260 GGAAGCGTTTTCATTGCAATGTTGCAGGAAAATTACGGTAAGTTTAGGGGCAAAGTTAGT 319
Query 205 GTGAGAATCTGGAGAAGAGGAGGCAGAGCAATCGATAAAAG-CACAGCTGAACATTTGTT 263
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 320 GTGAGAATCTGGAGAAGAGGAGGCAGAGCAATCGAT-AAAGCCACAGCTGAACATTTGTT 378
Query 264 CGAAGTCATTAATTCGAGGGAAGAATTGTTGAGGAGGTTGATAAGACGGTGTGCTTATCT 323
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 379 CGAAGTGATTAATTCGAGGGAAGAATTGTTGAGGAGGTTGATAAGAAGGTGTGCTTATCT 438
Query 324 CAAGTATGTGGAAGCTAGATTAGGGGATAGGGTTTTATACGCGGATGAGATATTGAAAGA 383
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 439 CAAGTATGTGGAAGCTAGATTAGGGGATAGGGTTTTATATGCTGATGAGATATTGAAAGA 498
Query 384 TGGGTTTTGCTTGAATATGATTGAGACTCCTTTGTGTCCTTTGAAAGTTGTGACTAATCT 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 499 TGGGTTTTGCTTGAATATGATTGAGACTCCTTTGTGTCCTTTGAAAGTTGTGACTAATCT 558
Query 444 TCAAGAAGCTGTTTGGGATGCTGATATTGTCATCAATGGTTTACCATCAACTGAGACATT 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 559 TCAAGAAGCTGTTTGGGATGCTGATATTGTCATCAATGGTTTACCATCAACTGAGACGTT 618
Query 504 TCAGGTGTTCAATGAGATTAGTAAGTACTGGAAAGAGAGGGTTAATGCTCCTGTTATTAT 563
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 619 TCAGGTGTTCAATGAGATTAGTAAGTATTGGAAAGAGAGGGTTAATGCTCCTGTTATTAT 678
Query 564 CTCTTTGGCTAAAGGTGTGGAAGCAGAGTTTGAGCCTCATCCTCGTATTGTTACTCCTAC 623
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 679 CTCTTTGGCTAAAGGTGTGGAAGCAGAGTTTGAGCCTCATCCTCGGATTGTTACTCCTAC 738
Query 624 GCAAATGATCTATCGAGCGACTGGTATTCCTCTTGAGAACATTCTCTACCTTGGGGGACC 683
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 739 GCAAATGATCCATCGAGCGACTGGTATTCCTCTTGAGAACATTCTCTACCTTGGGGGACC 798
Query 684 TAATATTGCTTCAGAGGTATACAACAAAGAGTACGCCAATGCACGGATTTGCGGGTCTGA 743
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 799 TAATATTGCTTCCGAGGTATACAATAAAGAGTACGCCAATGCACGGATTTGCGGGTCTGA 858
Query 744 AAAATGGAGGAAGCCTTTGGGAAAGTTTCTAAGGCAGTCTCATTTCATAGTGTGGGATAA 803
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 859 AAAATGGAGGAAGCCTTTGGGAAAGTTTCTAAGGCAGTCTCATTTCATAGTCTGGGATAA 918
Query 804 CAGTGACCTCATTACTCATGAAGTAATGGGTGGCTTGAAGAATGTTTATGCCATCGGTGC 863
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 919 TAGTGACCTCATTACTCATGAAGTAATGGGTGGCTTGAAGAATGTTTATGCCATTGGTGC 978
Query 864 AG 865
||
Sbjct 979 AG 980
Score = 896 bits (485), Expect = 0.0
Identities = 507/518 (98%), Gaps = 0/518 (0%)
Strand=Plus/Plus
Query 863 CAGGAATGGTGGCTACACTGACTAAGGAAAGTGCTACCAGCAAATCAGTATACTTTGCGC 922
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1008 CAGGAATGGTGGCTACACTGACTAAGGAAAGTGCTACCAGCAAATCAGTGTACTTTGCGC 1067
Query 923 ATTGTACTTCAGAGATGATTTTTATTACTCATTTATTGGCCAAGGAGCCAGAGAAACTTG 982
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1068 ATTGTACTTCAGAGATGATTTTTATTACTCATTTATTGGCCAAGGAGCCAGAGAAACTCG 1127
Query 983 CAGGGCCTTTGCTCGCGGATACCTATGTAACATTACTAAAAGGTCGTAATGCGTGGTATG 1042
| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1128 CTGGGCCTTTGCTTGCGGATACCTATGTAACATTACTGAAAGGTCGTAATGCGTGGTACG 1187
Query 1043 GCCAGAAACTTGCAAAAGGAGAACTTAGCCTTGAAATGGGTGACAGCATCAAAGGCAAGG 1102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 GCCAGAAACTTGCAAAAGGAGAACTTAGCCTTGAAATGGGTGACAGCATCAAAGGCAAGG 1247
Query 1103 GAATGATTCAGGGGGTTTCTGCGGTGAAAGCATTTTTCGAGTTGTTGAACCAATCCTCGT 1162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1248 GAATGATTCAGGGGGTTTCTGCGGTGAAAGCATTTTTCGAGTTGTTGAACCAATCCTCGT 1307
Query 1163 TAAGTCTTCAACACCCTGAAGAGGGCAGGCCTGTAACTCCGGCTGAACTCTGTCCCATCT 1222
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 1308 TAAGTCTTCAACACCCTGAAGAGGGCAAGCCTGTAACTCCGGCTGAACTTTGTCCCATCT 1367
Query 1223 TAAAGATGCTCTACAGAATTCTTATAACAAGAGAGTTCTCGTGTGAGGCGATTCTTGATG 1282
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1368 TAAAGATGCTCTACAGAATTCTTATAACAAGAGAGTTCTCGTGTGAGGCGATTCTTGAGG 1427
Query 1283 CGCTGAGAGACGAGACGATGAATGACCCACGTGAACTCATCGAGATTGCTCACAGCCATC 1342
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1428 CGCTGAGAGATGAAACGATGAATGACCCACGTGAACTCATCGAGATTGCTCACAGCCATC 1487
Query 1343 TCTTCTTCCAGCCATGGCTTCTTGGTCAGAAACCTTGA 1380
||||||||||||||||||||||||||||||||||||||
Sbjct 1488 TCTTCTTCCAGCCATGGCTTCTTGGTCAGAAACCTTGA 1525
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67971537930
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5